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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttttgaatgttttgttttacatcaaaagagatgaaaaatagaaacttttatatatattcaagctaactttatctttctttgtttaacagttttattataaaattctaatgggattgtaatttgtagAGAAACTTTACATCATCTTTTGTGGATGATGGACTTCTTGAGATTATAGGATTTAGAGATTCATGGCATGCGGAAAAGTTTCTTCCTTTGAATTGCCATG

Basic information

species Vitis vinifera
transcript Vv12s0178g00170.t01
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctttgtttaacagttttattataaaattctaatgggattgtaatttgtagAGAAACTTTACATCATCTTTTGTGGATGATGGACTTCTTGAGATTATAGGATTTAGAGATTCATGGCATGCGGAAAAGTTTCTTCCTTTGAATTGCCATG
                               ttctaat  putative branch site (score: 2)
      tttgtttaacagtttt  TA-rich tract