Sequence
atgc intronic sequence ATGC exonic sequence...gtgattatattaaacaagtaggttgaattttaagaaattgtggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G05880.1 (Glycine max), 3'ss of exon 7
gtgattatattaaacaagtaggttgaattttaagaaattgtggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttat--tctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
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-----------------gtgagtgtcaataatatcactctttacagtgtgttggtt-ttgcaatttacaggatcttcaagtaatgatatcctctgtctgcagGTGGTGCATTCTGGCCAACTTTCCTTATTGCTAACATTGCTGCACTTATTGCGAGTCGGGCTATGACAACAGCAACATTTTCATGTATAAAGCAATCAAC
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G24530.1 (Glycine max), 3'ss of exon 7
----gtgat--tatattaaacaagtaggttgaattttaagaaattgt-ggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
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gtaagtgatagtttatttagtttctgcactagtgtttataatgttttcagcgatatgtctttgccctttacagaatcttcatgt--gatactattttgtgtcttcagGTGGTGCATTCTGGCCAACTTTCCTCATTGCTAACATTGCTGCATTAATTGCAAGTCGGGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGC
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G19120.1 (Glycine max), 3'ss of exon 8
gtgattatattaaacaagtaggttgaattttaagaaattgtggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattct--gtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
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-----------------gtgagtgtcaatattatcactctttacagtgtgctggtttttgcaatttacaggatcttcaagtaatgatattctctgtctgcagGTGGTGCATTCTGGCCAACTTTCCTTATTGCTAACATTGCGGCACTTATTGCGAGTCGGGCTATGACAACAGCAACATTTTCATGTATAAAGCAATCAAC
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G07720.1 (Glycine max), 3'ss of exon 5
------gtgattatattaaacaagtaggttgaattttaagaaattgtggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgt--ctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
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gtaagtgttagtttatttagtttctgcactagcctttatcaa--tgttttcagtgatatgtctttgcactttacagaatcttcatgtaatactattttgtgcttgcagGTGGTGCATTCTGGCCAACTTTCCTCGTTGCTAACATTGCTGCATTAATTGCAAGTCGTGCTATGACAACAGCCACATTTTCTTGTATAAAACAGTCAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718115|gb|FC066927.1|FC066927EST: GATCAATAAGGTCAACTCTTCTTTTCTTCTATCCCAA GTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTG
genomic: GATCAATATGGTCAACTCTTCTTTTCTTCTATCCCAAgtaagcttca ... ctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
ttttattctgtctcc CT-rich tract
aaggaaattttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattatattaaacaagtaggttgaattttaagaaattgtggttgcatgcctattgtttgaagaaaaaggaactgaaggaaattttattctgtctccagGTGGTGCTTTCTGGCCAGTCTTCCTCATTGCCAACATTGCTGCACTAATTGCCAGTCGGGCAATGACAACGGCCACATTTTCATGTGTAAAACAATCAAC
- - - - - taaacaa
- - - - - - - - - - - - - - - -aagaaat
- - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaa