Sequence
atgc intronic sequence ATGC exonic sequence...gctttattttcttacataaacataaacagatatcagttatttatttataatcgctagtgctaatgcttaataatcataaaactggttccttttcttgtagCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G12730.1 (Glycine max), 3'ss of exon 3
--gctttattttctta---cataaacataaacagatatcagttatttatttataatcgctagtgctaatgcttaataatcataaaactggttccttttcttgtagCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTG
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atgctttagttattcatttcttgtttgtgtacgg-catgaaaagctcattcttctccctt--tatctatttttgttgttgattctatt--ctttttatttgatagCAATATGGGGATATCAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTG
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G42230.1 (Glycine max), 3'ss of exon 2
------gct-ttattttcttacataaacataaacagatatcagttatttatttataatcgctagtgctaatgcttaataatcataaaactggttccttttcttgtagCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTG
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gctttagttattcatttcttatttgtgtacaacatgaaaagagttcttctccctttatt--taactattttg-ttgatgattct----tttcttttttatttgatagCTATATGGGGACATTAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTG
upper sequence: Vv12s0142g00100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S271_57V6.1 (Physcomitrella patens), 3'ss of exon 3
gctttattttcttacataaacata-aacagatatcagttatttatttataatcgctagtgctaatgcttaataatcataaaactggttcct--tttcttgtagCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTG
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-ttggggggtggtgtgtaggtttgtggtgggcaggagtggttggggtgcggg-gtgaggagcagcgct-aacgagcggtggtttgacttgtggtgtgtaacagCAATACGGGGCGATCCGGACGTTGTACACCGCATGCAAGCACAGAGGGTTCGTGATGATATCGTACTATGACATCCGGGCAGCGCGCAGCGCGATGAGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataatcgctagtgctaatgcttaataatcataaaactggttccttttcttgtagCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTG
ctggttccttttctt CT-rich tract
taatgcttaataatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctttattttcttacataaacataaacagatatcagttatttatttataatcgctagtgctaatgcttaataatcataaaactggttccttttcttgtagCAATATGGGGACATCAGAACTCTGTATACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGGGCAGCTCGAACTGCTATGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - -acataaa
- - - - - - - cataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaac