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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA

Basic information

species Vitis vinifera
transcript Vv12s0059g01930.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 3'ss of exon 4
----------gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
          | |  | |  || |||| |   |  ||   ||||    ||    | | |  |  |    ||| |  |  || | |  |  ||| |||  ||||||| |||||||| || |||||||| |||||||| || |||||  ||||||||||||||||| ||||||| ||||||||||| | ||| | | |||| ||
ggctattcttgctaattttgtgcttatgtttgttctgttgcaatctattttc-cattttagttgttgcttctgcctttcaactctt-tcttttatttttcagCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os05g42330.2 (Oryza sativa), 3'ss of exon 4
--gtttgtctgtt-gtttatatcattagtgaatcaattaggttgagtagtgt----tttcatgcagtctacaatctaaatatcattctt-tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
    ||||||| | |  | | |   || ||    |  || | ||     |      || | | |  | ||    |  ||  |||  ||| ||||| |||||||| |||||||| || || |||||||||||||| |||||||| || ||||| ||| | ||| ||||||| ||||| || |||| ||| |   |||||||
tgcattgtctgctagcatttgtttctactgttgtagctaagatgccctttacaaagttgcttactatttatttacctaacttcacccttctcttttgcagCTGGCATTGTCATTGAAGATAAAAATTGGCCACCCTTTTTCCCTCTCATTCACCATAATATTTCAAATGAGATACCTATTCATCTACAAAGAATGCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 3'ss of exon 5
------------gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
               |||       | |||| | |  || || ||  |  |      | | | | |  |  | | | |  | | |   ||      |||| ||||||| |||||||| ||||||||||| ||||| |||||| | || || || |||||||| ||  | ||||| ||||| |  || |  || |   |||| ||
tttagaataacaaggtgttcag-actaatataacttatgcattaaacatttctcacgg-gctattaaact-tatgccactttattggtataacacttttg-cagCTGGTATTGTCATTGAGGAGAAAAACTGGCCTCCATTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G100809_T01 (Zea mays), 3'ss of exon 4
-------gtttgtctgttgtttatatcat-tagtgaatcaat-taggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
       ||| |  || || |  ||  |     ||||  ||| | |||||     | |||  |    ||  || | |    ||| ||  | | | |  ||||||| ||||| ||||| |||||||||||||| || ||||||||||| || || ||||||||| | ||||| ||||| ||||||| ||| | | |||| ||
agaatcagttggattggtggtggtaaaacaccctgaagaaatctcggttgctatatatttcgagcttgtgcactaacctt-tattatcttctatctttcagCTGGCATTGTGATAGAAGAGAAAAATTGGCCTCCCTTTTTCCCCCTCATCCACCATGACATTTCTAATGAGATACCTATCCATCTACAAAGGATGCAATA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G169773_T02 (Zea mays), 3'ss of exon 4
---------gtttgtctgttgtttat-atcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttc-tttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
         | |  | ||||| ||||   |  |  || |    ||        |||   | || |  | |  | |||  |    |  | ||||| |||||||||||| |||||||| || || || ||||||||||| ||| | ||| ||||||||||||||||| | || || |||||||| || |  || | | |||||||
actaattaagctaatttgttgcttattgcccatgctgcagtccttttacctgttaggtctgtcttttaata-ataat--accctttttcctttcgtttggcagCTGGTATTGTCATTGAAGATAAGAATTGGCCACCCTTTATGCCCATTATTCATCATGACATTTCGAACGAGATACCAATTCACCTGCAAAGGATGCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G448715_T01 (Zea mays), 3'ss of exon 5
----------gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
          |  ||    || |||  |||  |  |      || | ||| | |  |  |||||     |    |   || || ||||| ||| |||||||||||| |||||||| ||||||||||||||||| || ||| | || || || |||||||| ||    ||||| ||||| |  || |  || |   |||| ||
cagggcattggcatgaaaattattttgatccatgtttttaagataaagttcatt--ttgtttcacaagtttctaagcttacatttcattatttgtttggcagCTGGCATTGTCATTGAGGAGAAAAATTGGCCTCCTTTTATGCCACTCATCCATCATGATATCATCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G174730_T01 (Zea mays), 3'ss of exon 4
-------gtttgtctgttgtttatatcattag--tgaatcaat-taggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
       | |||  |    |     | |  |   ||||  ||| | |||||     | |||| |     || || | |    | ||||  ||| |||  |||||||  |||| ||||| |||||||| ||||| || ||||||||||| || || || |||||| | ||||||||||| ||||||| ||| | | |||||||
catagagggttggataccctaaccctaaacaccctgaagaaatatgggttgttatatatttttagtttttccactaacctt-tgtcatcttttatttt-cagCTGGCGTTGTGATAGAAGAGAAAAACTGGCCTCCCTTTTTCCCCCTCATCCACCACGACATTTCCAATGAAATACCTATCCATCTACAAAGGATGCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G041181_T01 (Zea mays), 3'ss of exon 5
-----gtttgtc-tgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatct-aaatatcatt-ctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
       ||||| ||  | |||| |  |   ||  |  | ||    |   | | | ||   |  ||    || || | || | |||  ||| |||||||||||| |||||||| ||||||||||||||||| || ||| | || || || |||||||| ||  | ||||| ||||| |  || |  || |   |||| ||
ctgggccttgtcatgaagattatttgttccatgtttttaatataaagctcattttgtttcagaggttgctaagcttacattttattattttgtttggcagCTGGCATTGTCATTGAGGAGAAAAATTGGCCTCCTTTTCTGCCACTCATCCATCATGATATCACCAATGAGATACCGAGTCACCTTCAAAGAATGCAATA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G45160.1 (Glycine max), 3'ss of exon 5
--gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
   ||||  | |  | |||    |     |||||| |||  |||    ||| ||  ||   |||  | |||  || |  || |||| || ||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||| | ||||  || | | | |||||
gtatttgagt-tcatctattctttatagaaatcaactagagtgatgtctgtattt-tggtttcttaactctttatttttttttttcatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAAGGAAATACCAGTACATCTTCAAAGGATCCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 3
gt-ttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
|| || |  ||| || |   | |||   || | |  |||   |||| ||  || |     |      | || |  |  || ||  ||| |||||||||||||| ||||||||||||||||||||||| |||| |||| | |||||||| |||||||||||||||||||| || ||||  ||     | |||||
gtattttgagttcttcaacactttacataacccaacagg---agtaatgccttta---gtttggtggtttacactt--tttttgtttttgcagCTGGAATTGTTATAGAGGAGAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G11820.2 (Glycine max), 3'ss of exon 5
--gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtc--tacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
   ||||  ||  ||| |  | |||  |  |  ||| |  | ||||  ||| |  ||   |    |  ||| ||  |||  || || | || ||||||||||| || ||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||| ||||||||||| ||||  || | | | |||||
gtatttgattga-gttcacct-attcttatagaaatcaactagagtgatgtctgtattttggtgttttaatttatttat--tttttccatttgcagCTGGAATAGTTATAGAGGAGAAAAATTGGCCACCTTTTTTTCCCATCATTCATCATGACATTGCAAAGGAAATACCAATACATCTTCAAAGGATCCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G37590.1 (Glycine max), 3'ss of exon 3
gtttgtctgttgtttatatcattagtga-atcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
    || | |||  |  |||  || | | || |   |    || || ||  || |     |      | || |     || ||||||| |||||||||||||| |||||||| |||||||||||||| |||| |||| | |||||||| |||||||||||||||||||| || ||||  ||     | |||||
----gtattttgagttcatctatacttacataacccaacaggaataatgccttta---gtttggtggtttacac----ttttttcttttgcagCTGGAATTGTTATAGAGGATAAAAATTGGCCACCTTTTTGCCCCATCATTCATCACGACATTGCAAATGAAATACCTATACATCTTCAATCAATCCAGTA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
|| | | |||   |  |||| || ||  |      |   |||    |  || ||||     | |  ||    | ||||  ||  ||||| ||| |||||||| ||||| |||||||| |||||||| ||||| || || || |||||||||||| ||||||| ||||| |||||||  ||||   | || ||
gtatctttgtcaatattatcttttgtaga------aacctgacatttcgttccatgtgaaatgc--tcatgctgtcatctttattttggtagCCGGAATTGTGATAGAAGAGAAAAACTGGCCACCGTTTTTTCCTCTCATCCATCATGACATTTCAAATGAGATACCCATCCATCTGCAGAGAATCCAATA

upper sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S50_114V6.4 (Physcomitrella patens), 3'ss of exon 5
-gtttg--tctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattcttt------ctttgg-cagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
  ||||   |||   |||        | ||  | |||  || ||  |       ||| ||||  |   || | | | |   | |||      |||||| ||||||| ||| |||| ||||| |||||||||||||| ||| | ||  || ||||||| |||||||| ||||| ||||||   |||   ||| |  | |||||
aatttggacctgcattttgacatgccactgtct-aatgtggatggttccctacatcaagcaggatggtat-tgattgtttctttttggtgggctttggtcagCTGGTATTCTCATTGAGGACAAAAATTGGCCACCGTTTGTTCCAATTCTTCATCACGACATTGCTAATGACATACCAGCACATACTCAGCAACTACAGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418607|gb|EC984768.1|EC984768
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|77584192|gb|DV221151.1|DV221151
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|27584710|gb|CB007405.1|CB007405
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|349811810|gb|FQ410607.1|FQ410607
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|27586086|gb|CB008781.1|CB008781
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|110385536|gb|EC950069.1|EC950069
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|71884369|gb|DT033424.1|DT033424
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|27584919|gb|CB007614.1|CB007614
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|110376126|gb|EC941168.1|EC941168
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|110357026|gb|EC920280.1|EC920280
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|71870414|gb|DT019469.1|DT019469
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|110699817|gb|EE077160.1|EE077160
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|71870410|gb|DT019465.1|DT019465
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|110722937|gb|EE099679.1|EE099679
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
EST: gi|110722049|gb|EE097937.1|EE097937
EST:     GAACTAAAACGGAGGGAAGATGCTGTAGCACGAG                         CTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC
genomic: GAACTAAAACGGAGGGAAGATGCTGTAGCACGAGgtttgtctgt ... tctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA
                            atctaaa  putative branch site (score: 3)
                                   tatcattctttcttt  CT-rich tract
                           aatctaaatatcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtctgttgtttatatcattagtgaatcaattaggttgagtagtgttttcatgcagtctacaatctaaatatcattctttctttggcagCTGGAATTGTCATAGAGGAGAAAAATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT