1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaattaaaatcatcccaaagactccactgatacacccttttgcaatccaccaactaaaccatgtttctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAACAAGAACTCCGCCTCATTTCAAAACCAGCTGTCACAAGAAGCCAGTGATG
species | Vitis vinifera |
transcript | Vv12s0059g00270.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTACCAAAGGATATGTTTCAGAAGAGGAAGCTGGGAAAAGACTTGCACAG GTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAACEST: gi|45771635|gb|CN007487.1|CN007487
genomic: TTACCAAAGGATATGTTTCAGAAGAGGAAGCTGGGAAAAGACTTGCACAGgtgaattaaa ... tctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAAC
EST: TTACCAAAGGATATGTTTCAGAAGAGGAAGCTGGGAAAAGACTTGCACAG GTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAACEST: gi|349829894|gb|FQ422207.1|FQ422207
genomic: TTACCAAAGGATATGTTTCAGAAGAGGAAGCTGGGAAAAGACTTGCACAGgtgaattaaa ... tctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAAC
EST: AGAGGAAGCTGGGAAAAGACTTGCACAG GTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAACEST: gi|110416548|gb|EC982538.1|EC982538
genomic: AGAGGAAGCTGGGAAAAGACTTGCACAGgtgaattaaa ... tctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAAC
EST: TTACCAAAGGATATGTTTCAGAAGAGGAAGCTGGGAAAAGACTTGCACAG GTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAAC
genomic: TTACCAAAGGATATGTTTCAGAAGAGGAAGCTGGGAAAAGACTTGCACAGgtgaattaaa ... tctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAAC
actccactgatacacccttttgcaatccaccaactaaaccatgtttctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAACAAGAACTCCGCCTCATTTCAAAACCAGCTGTCACAAGAAGCCAGTGATG
tgtttct CT-rich tract
aactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattaaaatcatcccaaagactccactgatacacccttttgcaatccaccaactaaaccatgtttctgattcagGTTGTTACCGATCCAAGCCTGACAAAGTCAGGAGTTTACTGGAGCTGGAACAAGAACTCCGCCTCATTTCAAAACCAGCTGTCACAAGAAGCCAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC