Sequence
atgc intronic sequence ATGC exonic sequencegttcagtttttcgctttcatcaccttctttttcagcctcttacattgctcacttccatgttcattaccattaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G37430.1 (Glycine max), 3'ss of exon 3
gttcagtttttcgctttcatcaccttctttttcagcctcttacattgctcacttccatgttcattaccattaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
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-----------------gtgtaaattctctcccatcatttt-catctccctctttgtcaataatga--actaatgattaactaaattcagGAGCCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTGATGTTAAGTCAGTTATAAGGAACATCTACACACTCTTCTCTGGAAGTGAGATACCAATAGCAG
upper sequence: Vv12s0059g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G12300.1 (Glycine max), 3'ss of exon 3
--gttcagtttttcgctttcatcac--cttctttttcagcctcttacattgctcact---tccatgttcattaccattaatacctg---tctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
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taaatggttttatagctttcgggactacttaggaaaaaggataatactttgaggactaaattgatgatttattcaattattgactgatttcaattttcagGAGCCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTCCTGTGAAATCAGTGATAAGGAACATCTACATTCTCTTCTCTAGAAGTGAGGTTCCAATAGCAG
upper sequence: Vv12s0059g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G33040.1 (Glycine max), 3'ss of exon 4
gttcagtttttcgctttcatcaccttctttttcagcctcttacattgctcacttccatgttcattacca-ttaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
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-------------------gtaaattctctcccatcatttt-cat--ctcgctctc-tgtcaataatgaactgatgatcaactaaatccagGAGCCAGGGAGAGCAGAAGCAGATTGTTGCCACTTTGATGTTAAGTCGGTTATAAGAAACATCTACACACTCTTTTCTGGAAGTGAGATACTAGCAGGCG
upper sequence: Vv12s0059g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G12800.2 (Glycine max), 3'ss of exon 3
-----gttcagtttttcgctt---tcatcaccttctttttcagcctcttacattgctcacttccatgttcattaccattaatacctg--tctaattg-cagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
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atcaaaatttgttttatatttatctcatagcctgttttctctaatttttataccccttcctagt-tgttagaggtaattattgactgattccatttttcagGAGCCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTCCTGTGAAATCAGTGATAAGGAACATCTACACTCTCTTCTCTAGAAGTGAGGTTCCAATAGCAG
upper sequence: Vv12s0059g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G44990.1 (Glycine max), 3'ss of exon 3
---------gttcagtttttc--gctttcatcacct-tctttttcagcctcttacattgctcacttccatgttcattacc-attaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
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caagtacaagtaaagattgtacaggtataaggaccaatcttttttatattcat---tggaatgttttagtagtaattattgattgattccaattccaattcagGAGCCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTCCTGTGAAATCAGTGATAAGGAACATCTACACTCTCTTCTCTAAAAGTGAGGTTCCAATAGCAG
upper sequence: Vv12s0059g00220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G44980.1 (Glycine max), 3'ss of exon 3
------gttcagtttttcgctttcatcaccttctttttcagcctctt-acattgct---cacttccatgttcattaccattaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
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atactaagcatgatttctgatttattgaaagcgtaaaacattttttttatattcctttccaatttcttagccgttattgttgtcaattttgaattttcagGAACCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTCCCGTGAAATCAGTGATAAGAAACATCTACACTCTCTTCTCTAAAAGTGAGATTCCAATAGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294963842|gb|GW836717.1|GW836717EST: TTATCCCAATGCATCTCCTTCCCAAAGGCTTCTACGTATTGAGGTGGCAG GAGCCAGCGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACTGTG
genomic: TTATCCCAATGCATCTCTTTCCCAAAGGCTTCTACGTATTGAGGTGGCAGgttcagtttt ... ctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcttacattgctcacttccatgttcattaccattaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
cctgtct CT-rich tract
attaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcagtttttcgctttcatcaccttctttttcagcctcttacattgctcacttccatgttcattaccattaatacctgtctaattgcagGAGCCAGGGCGAGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGACAGTGATAAGAAACATCTACATGCTCTTCTGTAGAAGTGAGCTCCAAGTAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT