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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttttttttgtttgtttgtttttttagctgaaaatatctgaaattggttcatgtttttgcctgaactaacttggttcatgttttccatgtgttctctggagtttcagTGGTCAAGTTATTTAATGCT

Basic information

species Vitis vinifera
transcript Vv12s0057g01340.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349822056|gb|FQ408385.1|FQ408385
EST:     TTTCTTGGATTCACATGAAAAGTTTCTAATAGGCGTTGCTACAAAAGGAG                         TGGTCAAGTTATTTAATGCT
genomic: TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAGgtattttttt ... ggagtttcagTGGTCAAGTTATTTAATGCT
EST: gi|30136096|gb|CB921434.1|CB921434
EST:     TTTCTTGGATTCACATGAAAAGTTTCTAATAGGCGTTGCTACAAAAGGAG                         TGGTCAAGTTATTTAATGCT
genomic: TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAGgtattttttt ... ggagtttcagTGGTCAAGTTATTTAATGCT
EST: gi|110416919|gb|EC982928.1|EC982928
EST:     TTCTGATAGGCGTTGCTACAAAAGGAG                         TGGTCAAGTTATTTAATGCT
genomic: TTCTGATAGGCGTTGCTACAAAAGGAGgtattttttt ... ggagtttcagTGGTCAAGTTATTTAATGCT
EST: gi|110410989|gb|EC976685.1|EC976685
EST:     TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAG                         TGGTCAAGTTATTTAATGCT
genomic: TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAGgtattttttt ... ggagtttcagTGGTCAAGTTATTTAATGCT
EST: gi|110359762|gb|EC921857.1|EC921857
EST:     TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAG                         TGGTCAAGTTATTTAATGCT
genomic: TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAGgtattttttt ... ggagtttcagTGGTCAAGTTATTTAATGCT
EST: gi|110368210|gb|EC932179.1|EC932179
EST:     TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAG                         TGGTCAAGTTATTTAATGCT
genomic: TTTCTTGGATTCACATGAAAAGTTTCTGATAGGCGTTGCTACAAAAGGAGgtattttttt ... ggagtttcagTGGTCAAGTTATTTAATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgcctgaactaacttggttcatgttttccatgtgttctctggagtttcagTGGTCAAGTTATTTAATGCT
           aactaac  putative branch site (score: 1)
                                       ttctctg  putative PPT
                         atgtttt  TA-rich tract