Sequence
atgc intronic sequence ATGC exonic sequence...attgatgcttctaggccactgctgacttgtgaatatttgcttacatgaatgttgcattggtaattgtactcttaacatggtgctatgtgtgacaatctagGGAGTTATGATGACTCATGGGAATATTGTAGCTACCGCAGCAGCAGTTATGACAGTGATACCAGAACTGGGTAGCAAAGATATTTACTTGGCATACCTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g01270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G11700.1 (Glycine max), 3'ss of exon 4
attgatgcttctaggccactgctgacttgtgaatatttgct-tacatgaatgttgcattggtaattgtactcttaacatggtg---ctatgtgtgacaatctagGGAGTTATGATGACTCATGGGAATATTGTAGCTACCGCAGCAGCAGTTATGACAGTGATACCAGAACTGGGTAGCAAAGATATTTACTTGGCATACCTGC
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--tctagcctataaac-attgagaactc-tgaggatccccaacagttcagttatgtgtttacctttgatttgatggagtgttaaacttttttgtaatcattcagGGTGTCATGATTACTCACGGGAACATTGTAGCGACTACAGCAGCTGTTATGACAGTGATTCCAAATCTGGGTAGCAAGGATGTGTACCTGGCATACTTGC
upper sequence: Vv12s0057g01270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G07060.1 (Glycine max), 3'ss of exon 3
attgatgcttctaggccactgc--tgacttg-tgaatatttgcttacatg-aatgttg--cattggtaattgtactcttaacatggtgctatg------tgtgacaatctagGGAGTTATGATGACTCATGGGAATATTGTAGCTACCGCAGCAGCAGTTATGACAGTGATACCAGAACTGGGTAGCAAAGATATTTACTTGGCATACCTGC
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------------aagacattgtattaatataatgaaaattttcttgtctgcaacattgagaaccaataggatctccctcagctcagttctatgattccctttgatttgacagGGTGTTATGATTACTCATGGAAACATTGTAGCAACAACAGCAGCAGTTATGACAATTATTCCAAATCTTGGTAGCAAGGATGTGTACATGGCCTACTTGC
upper sequence: Vv12s0057g01270.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G07280.1 (Glycine max), 3'ss of exon 3
attgatgcttctaggccactgct-----gacttgtgaatatttgcttacatgaatgttgcattggtaattgtactcttaacatggtgcta----tgtgtgacaatctagGGAGTTATGATGACTCATGGGAATATTGTAGCTACCGCAGCAGCAGTTATGACAGTGATACCAGAACTGGGTAGCAAAGATATTTACTTGGCATACCTGC
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-------tttctagtctagtaattttgagaaccaagaagatcc-ccaacagctcagttacat-gtttacctttcacttgatggagtgctaactttttttgtaaattcagGGTGTCATGATTACTCACGGCAACATTGTAGCCACTACAGCAGCTGTTATGACAGTGATTCCAAATCTAGGTAGCAAGGATGTGTACCTGGCATACTTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaatgttgcattggtaattgtactcttaacatggtgctatgtgtgacaatctagGGAGTTATGATGACTCATGGGAATATTGTAGCTACCGCAGCAGCAGTTATGACAGTGATACCAGAACTGGGTAGCAAAGATATTTACTTGGCATACCTGC
tcttaac putative branch site (score: 2)
taattgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attgatgcttctaggccactgctgacttgtgaatatttgcttacatgaatgttgcattggtaattgtactcttaacatggtgctatgtgtgacaatctagGGAGTTATGATGACTCATGGGAATATTGTAGCTACCGCAGCAGCAGTTATGACAGTGATACCAGAACTGGGTAGCAAAGATATTTACTTGGCATACCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- tgatgct
- - - - - ctaggcc
- - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgtg