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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcgtcataacatattttttggtatttttttattaatatagttaagttagaagttactattttttctgtgcctgcttggtaacttggacagtggtattagatatcgaattgaattaacatcttaatgcaagaataacaatcataacacactgcacagGTCTGAGTTACAGGCTTCTCTGGATGCATGCCCTGCTTCAGTTCATGAATTTCGGATTCCTCCTAAAGCTCTTCTTGGATTGCATTCATATTGCCCCGTT

Basic information

species Vitis vinifera
transcript Vv12s0055g00430.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 4
gttagtcgtcataacatattttttggtatttttttattaatatagttaagttagaagttactattttttctgtgcctgcttggtaacttggacagtggtattagatatcgaattgaattaacatcttaatgcaagaataacaatcataacacactgcacagGTCTGAGTTACAGGCTTCTCTGGATGCATGCCCTGCTTCAGTTCATGAATTTCGGATTCCTCCTAAAGCTCTTCTTGGATTGCATTCATATTGCCCCGTT------------------------------------------------------
                                                        || | |     |||  |||  |  |  | | ||| ||  | |  |||   ||     ||| |  |  |  | |     ||| |    | ||   |   ||  |||| | ||||||||   |||  |  ||| |||  | |||||| ||||||| | | |||| ||||||||||||||| | ||||||||||| ||||| || ||                                                       
--------------------------------------------------------gtgagtgaaagttccatgctgggatactga-ttgaac--tcgagttaatgatgatgatgattagaggttgtgacttctgaa-actgtttatgtaat--tgagcaggcccgagttacaaagttcggtaaatggatgtgcagcttcatttcatgagtatagGATCCCTCCTAAAGCTCTTTTGGGATTGCATTCGTATTGTCCTGTACATTTTGATGCTTTCCATGCTGTCCTTGTTGATACTAGTGTTCATATCAGTCTA

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 4
gttagtcgtcataacatattttttggtatttttttattaatatagttaagttagaagttactattttttctgtgcctgcttggtaacttggacagtggtattagatatcgaattgaattaacatcttaatgcaagaataacaatcataacacactgcacagGTCTGAGTTACAGGCTTCTCTGGATGCATGCCCTGCTTCAGTTCATGAATTTCGGATTCCTCCTAAAGCTCTTCTTGGATTGCATTCATATTGCCCCGTT
||||||     |||  |   | ||  | ||||| | || ||     | ||| | |            |||  |||  |  |  | | ||| ||  |||  |||   ||     ||| |  |  |  | |     ||| |    | ||   |   ||  |||| ||||||||||   |||  |||||| |||  | |||||||||||||| | | | || ||||||||||||||| | ||||||||||| ||||| || || 
gttagt-----taatgttactctttctctttttctgttcat-----tgagtaaaag-----------ttccatgctgggatactga-ttgaac--tggagttaatgatgatgatgattagaggttgtgacttctgaa-actgtttatgtaat--tgagcagGCCTGAGTTACAAAGTTCGTTGGATGGATGTGCAGCTTCAGTTCATGAGTATAGAATCCCTCCTAAAGCTCTTTTGGGATTGCATTCGTATTGTCCTGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgaattgaattaacatcttaatgcaagaataacaatcataacacactgcacagGTCTGAGTTACAGGCTTCTCTGGATGCATGCCCTGCTTCAGTTCATGAATTTCGGATTCCTCCTAAAGCTCTTCTTGGATTGCATTCATATTGCCCCGTT
                                     tcataac  putative branch site (score: 2)
         aattaacatcttaat  TA-rich tract