1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtcttctgtagagttctatggaaacattggtatgcttaggtgtggtatatggagatctatctgttgtttaatgcgcttgctcattgtgtttgtatctagGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAG
species | Vitis vinifera |
transcript | Vv12s0035g01960.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCAT GGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTGEST: gi|110361549|gb|EC925031.1|EC925031
genomic: AGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCATgtaagtcttt ... ttgtatctagGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTG
EST: AGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCAT GGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTGEST: gi|30251196|gb|CB968929.1|CB968929
genomic: AGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCATgtaagtcttt ... ttgtatctagGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTG
EST: AGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCAT GGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTG
genomic: AGCTCACTTCATGATAGCAGCTTTGTGGCCAATTTCAACAAAGAAAGCATgtaagtcttt ... ttgtatctagGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTG
gtatatggagatctatctgttgtttaatgcgcttgctcattgtgtttgtatctagGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAG
gtttaat putative branch site (score: 4)
ttgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcttctgtagagttctatggaaacattggtatgcttaggtgtggtatatggagatctatctgttgtttaatgcgcttgctcattgtgtttgtatctagGGGATATGAATCAGGGACTGGAAGTGTAGGTTGCAACAGCTTTTTCTGTTGGAATAACGACAAACCTCCTAAAAGGGGAAAG
- -cttctgt
- - - - - - - - - - ggaaaca
- - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - -ggtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcgc