Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacattattatgtccacactagggctttataaggcaaaacttttgaacagatccttaaaccaagttacgaatttaagtgagactgatttgtggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGTGAAAGACGATTACCTGCTGATCAAAGGATGTTGCGTGGGACCAAAGAAG

Basic information

species Vitis vinifera
transcript Vv12s0035g01020.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G61580.1 (Arabidopsis thaliana), 3'ss of exon 5
aacattattatgtccacactagggctttataaggcaaaacttttgaacagatccttaaaccaagttacgaatttaagtgagactgatttgtggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGTGAAAGACGATTACCTGCTGATCAAAGGATGTTGCGTGGGACCAAAGAAG
   | || ||    |   || | | | | | || ||    | | | |      |||         | |  ||     |    ||| ||| |  | | ||| |||||||||||||| || |||||||||||||| || || |||||| | ||||| || |||||  || ||||||| |||||||||||||| || ||||| 
-gtaataatactaacgatcttgaggtgtttcagtcatctgtgtagtaagcggacttgtcttggtgttcatatgctgtttt--ctgttttcttttcaatagAACCGAGAAGGATATCACACCAATGGGAGGATTTCCCCACTATGGGATAGTGAAGGAAGATTATTTGATGATCAAGGGATGTTGCGTGGGGCCTAAGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351052229|gb|FQ452383.1|FQ452383
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32271568|gb|CD720727.1|CD720727
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|352791519|gb|FQ481098.1|FQ481098
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|349809727|gb|FQ398352.1|FQ398352
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32459982|gb|CD801156.1|CD801156
EST:     ACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: ACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110380767|gb|EC946060.1|EC946060
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351045493|gb|FQ440678.1|FQ440678
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32272210|gb|CD721369.1|CD721369
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|33401533|gb|CF207160.1|CF207160
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|71888864|gb|DT037919.1|DT037919
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|34320573|gb|CF373327.1|CF373327
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32267763|gb|CD716726.1|CD716726
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351033284|gb|FQ446516.1|FQ446516
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|30324056|gb|CD007318.1|CD007318
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110413791|gb|EC979602.1|EC979602
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110693491|gb|EE069770.1|EE069770
EST:     CCGAGTTTGACAT                         GACCCAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: CCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351048267|gb|FQ442237.1|FQ442237
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351026538|gb|FQ432436.1|FQ432436
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32269769|gb|CD718928.1|CD718928
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|30327279|gb|CD010541.1|CD010541
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110362415|gb|EC925946.1|EC925946
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32267656|gb|CD716619.1|CD716619
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|71883968|gb|DT033023.1|DT033023
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32459912|gb|CD801086.1|CD801086
EST:     CCAAGAGTCCCATTCTGCCATGACACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: CCAAGAGTCCCATTCTGCCATG--ACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32269927|gb|CD719086.1|CD719086
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110416262|gb|EC982230.1|EC982230
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCCCATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351045744|gb|FQ440929.1|FQ440929
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|45770938|gb|CN006790.1|CN006790
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32272194|gb|CD721353.1|CD721353
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110687580|gb|EE065148.1|EE065148
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|71887078|gb|DT036133.1|DT036133
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110426550|gb|EC992963.1|EC992963
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|110382371|gb|EC939297.1|EC939297
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|349810715|gb|FQ402958.1|FQ402958
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351027369|gb|FQ444618.1|FQ444618
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGACATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|351048851|gb|FQ449719.1|FQ449719
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|352795550|gb|FQ480138.1|FQ480138
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|30253073|gb|CB970624.1|CB970624
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACTGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32249830|gb|CD715649.1|CD715649
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|30323498|gb|CD006760.1|CD006760
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32272245|gb|CD721404.1|CD721404
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32270300|gb|CD719459.1|CD719459
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|71888779|gb|DT037834.1|DT037834
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
EST: gi|32267876|gb|CD717035.1|CD717035
EST:     GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAG                         GACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT
genomic: GTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGgttagacatt ... tggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagatccttaaaccaagttacgaatttaagtgagactgatttgtggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGTGAAAGACGATTACCTGCTGATCAAAGGATGTTGCGTGGGACCAAAGAAG
                                   gactgat  putative branch site (score: 3)
                        aatttaagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacattattatgtccacactagggctttataaggcaaaacttttgaacagatccttaaaccaagttacgaatttaagtgagactgatttgtggtaattagGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGTGAAAGACGATTACCTGCTGATCAAAGGATGTTGCGTGGGACCAAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - -ccacact
- - - - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa