1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caggccaattctagatcatttgatatctttattcttgcgcaaaacttttcctttaatctctatgtgtgcattgtaaccaatttcacacataaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAGAGAACTACCATATCTGCCCCTATCCAGATTGTGGAAAGAGATATGCTC
species | Vitis vinifera |
transcript | Vv12s0035g00660.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAG GCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAEST: gi|30125100|gb|CB910439.1|CB910439
genomic: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattc ... aaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
EST: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAG GCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAEST: gi|110729446|gb|EE105404.1|EE105404
genomic: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattc ... aaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
EST: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAG GCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
genomic: TTCATACAGGAGAGAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGGAAGgtgatcattc ... aaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAA
ttttcctttaatctctatgtgtgcattgtaaccaatttcacacataaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAGAGAACTACCATATCTGCCCCTATCCAGATTGTGGAAAGAGATATGCTC
ttgtaac putative branch site (score: 2)
acataaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggccaattctagatcatttgatatctttattcttgcgcaaaacttttcctttaatctctatgtgtgcattgtaaccaatttcacacataaaaatgcagGCATTCTCTCTAGATTTCAATTTAAGGTCACACATGAAAACACATTCACAAGAGAACTACCATATCTGCCCCTATCCAGATTGTGGAAAGAGATATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
caggcca
- - - - - - - - - - - - - - - - -cttgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacaca