Sequence
atgc intronic sequence ATGC exonic sequence...ttatttttattttacctctttttaacagatgagtagtgcagttaatcggaaacctttagagtaacatcttttttgttaattctattcaacacatctacagGGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATTCTGGAACTTCTGCTTGTCTGCAACAATGAGCAAATAATCTTTTGCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G44390.1 (Glycine max), 3'ss of exon 4
-----ttatttttatttta-cctctttttaacagatgagtagtgcagttaatcggaaacctttagagtaacatcttttttgttaattctattcaacacatctacagGGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATTCTGGAACTTCTGCTTGTCTGCAACAATGAGCAAATAA--TCTTTTGCTGAG
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ttcaaatatctttatagtaatctagttatatcatatatggtttg-aattgtttaga----ttgcaagtcttacattccttggctatttt-tatggtgtatgtatagGGTGGTGCCTCTTCAAGCCCGAGTGGCTTTCATGTCAATGGGCTCAGTATTTTGGAACTTCTACTTGTCATCAACAATGACCAAATAAAATGCATTGTTT--
upper sequence: Vv12s0028g01550.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA12G13360.1 (Glycine max), 3'ss of exon 5
ttatttttattttacctctttttaacagatgagtagtgcagttaatcggaaacctttagagtaacatcttt---tttgttaattctattca--acacatctacagGGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATTCTGGAACTTCTGCTTGTCTGCAACAATGAGCAAATAATCTTTTGCTGAG
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---tagctttcaaatatctttataataatctagttattta--tggtttgaattgtttagattgtaagtcttacattcattggctgtttttatgctgtatgtatagGGTGGTTCCTCTTCAAGCCCGAGTGGCTTTCATGTCAATGGGCTCAGTATTTTGGAATTTCTACTTGTCATCAACAATAACCAAGTAA------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373369|gb|EC937597.1|EC937597EST: GATATAAGTTCTGGATCCCTGTCAGTGTATTGAACTTTTG GGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATT
genomic: GATATAAGTTCTGGATCCCTGTCAGTGCATTGAACTTTTGgtaaattttc ... acatctacagGGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcggaaacctttagagtaacatcttttttgttaattctattcaacacatctacagGGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATTCTGGAACTTCTGCTTGTCTGCAACAATGAGCAAATAATCTTTTGCTGAG
atcttttttgttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatttttattttacctctttttaacagatgagtagtgcagttaatcggaaacctttagagtaacatcttttttgttaattctattcaacacatctacagGGTGGTGCCGCTTCAAGCCCGTGTAGCTTTCATGTCCATGGGCTCCATATTCTGGAACTTCTGCTTGTCTGCAACAATGAGCAAATAATCTTTTGCTGAG
- - - - - - - - - - - taacaga
- - - - - - - - - - - - - - - - - - tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - -ggaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctattca