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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgctttatgagcctttatactaccatctatctgagtttctgtcaaagaaaaatagctaatcaaagtgtctgtaccaattttcagGCCAGGAGTATGGGGAAATGAAG

Basic information

species Vitis vinifera
transcript Vv12s0028g01100.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g01100.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G06690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtcagtgctttatgagcctttatactaccatctatctgagtttctgtcaaagaaaaatagctaatcaaagtgtctgtaccaattttcagGCCAGGAGTATGGGGAAATGAAG
          ||||  ||  || | |    |     | |    |  |  |||  ||  | || |  |   | |||  |  |  ||||||||||||| |||||||||||||||
---------gtatgcaccccta-attcatgttggagtaaacaacactagaaggtaacaatctcactat--tttcttaattatatttcagGCCAGGACTATGGGGAAATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265252|gb|CA816315.1|CA816315
EST:     TCCCTATGTCGCCTTGGACTTTCATCAGTGGATCTCTATCAACTTCATTG                         GCCAGGAGTATGGGGAAATGAAG
genomic: TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctt ... caattttcagGCCAGGAGTATGGGGAAATGAAG
EST: gi|110730925|gb|EE108561.1|EE108561
EST:     TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTG                         GCCAGGAGTATGGGGAAATGAAN
genomic: TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctt ... caattttcagGCCAGGAGTATGGGGAAATGAAG
EST: gi|110381894|gb|EC937946.1|EC937946
EST:     TCCCTATGTCGCCTTGGACTTTCATCAGTGGATCTCTATCAACTTCATTG                         GCCAGGAGTATGGGGAAATGAAG
genomic: TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctt ... caattttcagGCCAGGAGTATGGGGAAATGAAG
EST: gi|26263992|gb|CA815055.1|CA815055
EST:     TCCCTATGTCGCCTTGGACTTTCATCAGTGGATCTCTATCAACTTCATTG                         GCCAGGAGTATGGGGAAATGAAG
genomic: TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctt ... caattttcagGCCAGGAGTATGGGGAAATGAAG
EST: gi|110720549|gb|EE096568.1|EE096568
EST:     TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTG                         GCCAGGAGTATGGGGAAATGAAG
genomic: TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctt ... caattttcagGCCAGGAGTATGGGGAAATGAAG
EST: gi|110370834|gb|EC934386.1|EC934386
EST:     TCCCTATGTCGCCTTGGACTTTCATCAGTGGATCTCTATCAACTTCATTG                         GCCAGGAGTATGGGGAAATGAAG
genomic: TCCCTATGTCGCCTTGGACTTTTGTCAGTGGATCTCTATCAACTTCATTGgtcagtgctt ... caattttcagGCCAGGAGTATGGGGAAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgagtttctgtcaaagaaaaatagctaatcaaagtgtctgtaccaattttcagGCCAGGAGTATGGGGAAATGAAG
                        agctaat  putative branch site (score: 3)
                                                ttttc  putative PPT
              aaagaaaaata  TA-rich tract