1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgataagaaaaccaacatggatgattgattttctgtcctttgtgttctaaaagcctgaattcttcggtttggactcatgtcttttgtttaattatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGCCTGTCAGATGATGACATACTCCGTGGGAAAGTGACTGACAAGTGGAGG
species | Vitis vinifera |
transcript | Vv12s0028g00960.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGEST: gi|110716794|gb|EE092085.1|EE092085
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGEST: gi|110382672|gb|EC946989.1|EC946989
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGEST: gi|28963735|gb|CB342768.1|CB342768
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGEST: gi|26262970|gb|CA814033.1|CA814033
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGEST: gi|30126994|gb|CB912333.1|CB912333
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGEST: gi|28958977|gb|CB339489.1|CB339489
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
EST: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGA TGCTAGGAGGGGAAGAATATATTTCCCACAGGATGAGCTTGAACGAGCAGG
genomic: CTTGGGATAGCCAATCAGCTCACTAACATACTCAGAGATGTCGGGGAGGAgtaagtttct ... attatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGG
tctaaaagcctgaattcttcggtttggactcatgtcttttgtttaattatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGCCTGTCAGATGATGACATACTCCGTGGGAAAGTGACTGACAAGTGGAGG
atgtcttttgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgataagaaaaccaacatggatgattgattttctgtcctttgtgttctaaaagcctgaattcttcggtttggactcatgtcttttgtttaattatatcagTGCTAGGAGGGGAAGAATATATCTCCCACAGGATGAGCTTGAACGAGCAGGCCTGTCAGATGATGACATACTCCGTGGGAAAGTGACTGACAAGTGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - aagaaaa
- - - - - - caacatg
- - - - - - - - - - - - - - - ttctgtc
- - - - - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - aaaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcatg