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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggacactgatcaatgaatagaaattgacattgagtcaatatttttatttgactaggttattttggaaatgatagGATGTACCTACTGGGGAGCTTCCTAGAAACATGCTTCTATCAGTGGATCGCCATCTTGTCCAAACCATTGTACCAGGCACAAGATTGACTATCATGGGAA

Basic information

species Vitis vinifera
transcript Vv11s0149g00130.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G22420.1 (Glycine max), 3'ss of exon 4
gtagggacactgatc--aatgaatagaaa---ttgacattgagtcaatatttttatt-tgactaggt----tattttggaaatgatagGATGTACCTACTGGGGAGCTTCCTAGAAACATGCTTCTATCAGTGGATCGCCATCTTGTCCAAACCATTGTACCAGGCACAAGATTGACTATCATGGGAA
|||   | ||  ||   ||| || | |||   || |  |    | || |||   ||| | || |  |    |  | ||   ||   ||||||| || ||||| ||||||||||||||| ||||||| || || ||||| ||||| || || ||  | ||||| ||| |||||||||| ||||||||||
gtattaatacaaatttgaataaaaataaaacattaaagtcacttgaaaattgaaattataaccatatgtaatgctgtgattattgaagGATGTTCCAACTGGTGAGCTTCCTAGAAACTTGCTTCTCTCTGTTGATCGACATCTGGTTCAGACAGTGGTACCTGGCTCAAGATTGACAATCATGGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattgacattgagtcaatatttttatttgactaggttattttggaaatgatagGATGTACCTACTGGGGAGCTTCCTAGAAACATGCTTCTATCAGTGGATCGCCATCTTGTCCAAACCATTGTACCAGGCACAAGATTGACTATCATGGGAA
                 aatatttttatttgac  TA-rich tract