1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtgttacttaatcttcttttggctgtcatttaacacgagggtctttttcttttgaaactctacaaactcccatttgctttaaatattgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGATCAATAACTGGTTCATCAACCAAAGGAAACGGAATTGGCACAGCAATC
species | Vitis vinifera |
transcript | Vv11s0118g00800.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|351026924|gb|FQ436577.1|FQ436577
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|110403174|gb|EC964453.1|EC964453
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|351033382|gb|FQ446614.1|FQ446614
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|349832281|gb|FQ420842.1|FQ420842
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|349823669|gb|FQ415079.1|FQ415079
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|110358258|gb|EC922342.1|EC922342
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: GCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|351012554|gb|FQ430118.1|FQ430118
genomic: GCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|110712932|gb|EE088409.1|EE088409
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCTCTTNGAA-GCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCCACA GAGGAAGACAAAGCACGACTGGTGCANNGAA-CAGGCTTGCATTTNAAGCAEST: gi|351023592|gb|FQ432975.1|FQ432975
genomic: CCTCTT-GAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAG-GAAACAGGCTTGCATTTAAAGCA
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|351056126|gb|FQ453588.1|FQ453588
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGEST: gi|349830594|gb|FQ416892.1|FQ416892
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
EST: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACA GAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
genomic: CCCTCTTGAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTATCCAACAgtgtgttact ... attgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAG
ggtctttttcttttgaaactctacaaactcccatttgctttaaatattgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGATCAATAACTGGTTCATCAACCAAAGGAAACGGAATTGGCACAGCAATC
ttgtttt CT-rich tract
atttgctttaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttacttaatcttcttttggctgtcatttaacacgagggtctttttcttttgaaactctacaaactcccatttgctttaaatattgttttagGAGGAAGACAAAGCACGACTGGTGCAGGAAACAGGCTTGCATTTAAAGCAGATCAATAACTGGTTCATCAACCAAAGGAAACGGAATTGGCACAGCAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA