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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttaaaatttctgaaatctatcagaaaggaggttgtcatcttgaggtttaccatatactgtatggaatctccgtgggctaaatctgttgaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG

Basic information

species Vitis vinifera
transcript Vv11s0103g00120.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 3'ss of exon 4
ccttaaaatttctgaaatctatcagaaaggaggttgtcatctt-gaggtttaccatatactgtatggaatctccgtgggctaaatctgttgaaa----tttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG
   |||| |   |  | |   |       |   |||||| |   ||  |||| || ||| | |||| | |      ||  ||||| |   ||||    | |||||||| |||||||||||| ||| |||| ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||
--gtaaactagttatagttagttct----gtctttgtcaccaaagaaatttatcaaata-tatatgcatt------ggtttaaatataaagaaacatgtgtgcagGTGCTGTGGAAATGCGATGGGTTGACACATACTTCCCATTCACTAACCCGTCCTTTGAACTCGAGATATATTTTCAG

upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G078756_T01 (Zea mays), 3'ss of exon 4
ccttaaaatttctgaaatctatcagaaaggaggttgtcatcttgaggtttaccatatactgtatggaatctccgtgggcta-aatctgttgaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG
   ||||   | || |   | |           || |||| |   ||  |  |  |     |      |     |   ||| |      ||  || |||||||| ||| || ||||| ||| |||| ||||| ||||| || ||||||||||| ||||| || || ||||||||||||
--gtaaatcatttgtagcttgttcc--------ttatcatttgaggggatgacgaaattgatccttgtttcagataaactatagaaaaatgtcatctgcagGTGCTGTAGAGATGCGATGGGTTGACACATACTTCCCATTTACCAACCCATCCTTTGAGCTCGAAATATATTTTCAG

upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA18G52890.1 (Glycine max), 3'ss of exon 6
-----ccttaaaatttctgaaatctatcagaaaggaggttgtcatcttgaggtttaccatatactgtatggaatctccgtgggctaaatctgttgaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG-----------------------
     |||  |  |  ||  || | | ||  | | |  |  |  ||||    |||   |||  ||     |    |   | |  |    || |||   ||  |||||| |||||||||||||||| | ||||| |||||||| || || || ||||| ||||||||||| ||||||||  ||                       
agcctcctccatctccctctaaccaaacattatgtaaatgattttcttt---ttttaaatagccttctctgcgcatttatagtttttcccttttgcgttt--cagGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCGTTTGAACTTGAAATATATTTCAAGGCATGCTATGCATACTTATCTCT

upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA02G10060.1 (Glycine max), 3'ss of exon 4
ccttaaaatttctgaaatcta--tcagaaaggaggttgtcatcttgaggtttaccatatactgtatgga---atctccgtgggctaaatctgttgaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG
     | |     |   ||||  |  |||     | | |    |||| ||  |  |||   || |  |     |     |    |    || ||    ||| |||||| |||||||||||||||| | ||||| |||||||| || || || ||||||||||||||||| || |||||  ||
----tatacacaaggcgtctagttatgaacttgtgatattcctttgaagtcaaatataatttgcaaagctacgtacttataaattttcccttttactgttt-cagGTGCTGTGGAAATGCGCTGGGTGGATACTTATTTCCCATTTACTAATCCATCATTTGAACTTGAAATTTATTTCAAG

upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT3G58140.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------------------ccttaaaa-----tttctgaaatctatcagaaaggaggttgtcatc---ttgag-----gtttaccatatactgtatggaatctccgtgggctaaatctgtt---gaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG
                                                  | | |||      ||  | | |  | |     | ||   | ||||    || ||     |||    | ||| |  ||| |||     ||  || |   | ||        |  |||||   ||||| ||| | ||| |||||||||||||||| || ||||| ||||| ||||| ||||||||||||||| ||
gtacattaagatccaataaacaatctatattcttcagcaagtgtaaataacttcaaagatggtttattaagagttgtttaggatgattatttcattaatttaagaagaagttggggaaata-tacatgaaataatt-tgatctgagcttctttttttggctgccagGTTCGGTGGAGATGAGATGGGTTGATACATATTTCCCATTTACCAATCCATCTTTTGAGCTTGAGATATATTTTAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352798745|gb|FQ478380.1|FQ478380
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|352790555|gb|FQ478194.1|FQ478194
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|77578106|gb|DV217823.1|DV217823
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTT
EST: gi|349825743|gb|FQ421842.1|FQ421842
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351054533|gb|FQ452009.1|FQ452009
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351044982|gb|FQ449236.1|FQ449236
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|352790299|gb|FQ481498.1|FQ481498
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349813045|gb|FQ411285.1|FQ411285
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349819738|gb|FQ402675.1|FQ402675
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351045887|gb|FQ441270.1|FQ441270
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351027076|gb|FQ439937.1|FQ439937
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349808821|gb|FQ406671.1|FQ406671
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351045846|gb|FQ441031.1|FQ441031
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351032114|gb|FQ460371.1|FQ460371
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTCTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|352786352|gb|FQ478961.1|FQ478961
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351053292|gb|FQ459160.1|FQ459160
EST:     GGCTGAGGATTTAAGGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351049456|gb|FQ450057.1|FQ450057
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351048459|gb|FQ448733.1|FQ448733
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTCTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351032730|gb|FQ462444.1|FQ462444
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|352789829|gb|FQ478644.1|FQ478644
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351052538|gb|FQ456386.1|FQ456386
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349807616|gb|FQ402007.1|FQ402007
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351048130|gb|FQ442100.1|FQ442100
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351052564|gb|FQ456412.1|FQ456412
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351043334|gb|FQ451386.1|FQ451386
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351018426|gb|FQ439238.1|FQ439238
EST:     GCTGAGGATTTAAAGAAATGTCTTTGAGG-TTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTC-CCAA
genomic: GCTGAGGATTTAAAGAAATGTCTT-GAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAA
EST: gi|33406238|gb|CF211865.1|CF211865
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351019220|gb|FQ429380.1|FQ429380
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349815992|gb|FQ403595.1|FQ403595
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349808786|gb|FQ406636.1|FQ406636
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTCTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349814979|gb|FQ410202.1|FQ410202
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTCTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|349830653|gb|FQ416951.1|FQ416951
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
EST: gi|351038109|gb|FQ465226.1|FQ465226
EST:     GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTG                         GTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT
genomic: GGCTGAGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGGCACTTGTTTGgtaaacttag ... aaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttaccatatactgtatggaatctccgtgggctaaatctgttgaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG
                               ggctaaa  putative branch site (score: 3)
                                          ttgaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccttaaaatttctgaaatctatcagaaaggaggttgtcatcttgaggtttaccatatactgtatggaatctccgtgggctaaatctgttgaaatttgcagGTGATGTGGAAATGCGCTGGATTGATACATATTTCCCTTTCACCAACCCATCATTTGAACTTGAGATATATTTTCAG

-cttaaaa
- - - - - - - - - - - - gaaagga
- - - - - - - - - - - - - - - - - - - - - - - - - -ccatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg