1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttctggataatctttctttccttgcagttaatgaatcttagtttgtggactcccaatgatatatgatatgctgatgaacttgcttgtttatttcttcccccttccttttcactttatttctaatgtgagCAGGTTTGTCTTAGAGCCAAAATCGGCCTTAATGAGTGAACAGGAACAGAAGCTCAAGGATAGTGAAGCTGCAATTGCTGGTTTACAG
species | Vitis vinifera |
transcript | Vv11s0065g00480.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATACAAGTCTATAGGGAGAA-EST: gi|71873337|gb|DT022392.1|DT022392
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-EST: gi|110380311|gb|EC945566.1|EC945566
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-EST: gi|110421110|gb|EC987398.1|EC987398
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-EST: gi|110390962|gb|EC955912.1|EC955912
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-EST: gi|110428276|gb|EC994743.1|EC994743
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-EST: gi|110392562|gb|EC958071.1|EC958071
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-EST: gi|110414808|gb|EC980666.1|EC980666
genomic: CATACAAGTCTATAGGGAGAAC
EST: CATACAAGTCTATAGGGAGAA-
genomic: CATACAAGTCTATAGGGAGAAC
tgaacttgcttgtttatttcttcccccttccttttcactttatttctaatgtgagCAGGTTTGTCTTAGAGCCAAAATCGGCCTTAATGAGTGAACAGGAACAGAAGCTCAAGGATAGTGAAGCTGCAATTGCTGGTTTACAG
ttctaat putative branch site (score: 2)
cttgtttatttcttcc CT-rich tract
ttttcactttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctggataatctttctttccttgcagttaatgaatcttagtttgtggactcccaatgatatatgatatgctgatgaacttgcttgtttatttcttcccccttccttttcactttatttctaatgtgagCAGGTTTGTCTTAGAGCCAAAATCGGCCTTAATGAGTGAACAGGAACAGAAGCTCAAGGATAGTGAAGCTGCAATTGCTGGTTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC