Sequence
atgc intronic sequence ATGC exonic sequence...taagtttattttgaaaagacaaaagaaccattcaagtgaaatgattgattgattgattttgtgacttacagtttctaagagttgaagttataacctgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G36500.2 (Glycine max), 3'ss of exon 4
-----taagtttattttgaaaagacaaaagaaccattcaagtgaaatgattgattgattgattttgtgacttacagtttctaagagttgaagttataacctgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
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ataaaaatgtgtacttgtgtgcctctataaaacaagtgaatttaattaa--ggtatataaacctag--atttctgctatataataaaggtatata-aaccagcagGATTTCAACGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATG
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G03070.1 (Glycine max), 3'ss of exon 4
taagtttattttgaaaagacaaaaga-accattcaagtgaaatgattgattgattgattttgtgacttaca-gtttctaagagttgaagttataacctgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
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-aaaatagtatagtagaaaaacaggctgtaatttttttaaaatgtttacttgtgtgccactataaaacaagtgaatttaataaaggtatata-aacctgcagGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATACG
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT2G07180.2 (Arabidopsis thaliana), 3'ss of exon 5
-----------------------------------------taagtttattttgaaaagacaaaagaaccattca---agtgaaatga-ttgattgattgattttgtgacttacagtttct---aagagttgaagttataacc-tgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
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gtcagctattgcctcttctgttttgagattacatatgtttttaattcttcttcttcaatagatagtgtctacaaaggtagtgaaatgacttggtttttctatttgtccgcctatgtttcccctgaaaggtgtatgtaatgcttgtgcagGGTTACAATGCTAAACTCTCTGACTTTGGACTGGCAAAGGATGGTCCAAGAGGAGACCAAACACATGTGTCTACACGTGTTATGGGGACTTACGGATACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattgattgattttgtgacttacagtttctaagagttgaagttataacctgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
ttataac putative branch site (score: 2)
attgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taagtttattttgaaaagacaaaagaaccattcaagtgaaatgattgattgattgattttgtgacttacagtttctaagagttgaagttataacctgcagAATTTTAGAGCAAAACTTTCAGACTTTGGGCTTGCAAAGGATGGACCTATGGGAGACCAGACCCATGTGTCAACACGTGTGATGGGCACATATGGATATG
- - - - - - gaaaaga
- - - - - - - - - - aaaagaa
- - - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - -gaaatga