Sequence
atgc intronic sequence ATGC exonic sequence...attttatccttccagcacgcttagaaattcttgttatgttgcatgtattttatttgcttattagtttgttacaaaatttctgttgcctctgttcccacagCTTCCATTCCTTTGTGGTCTTCCTTTTCTGGAGAAAAGAGCATCACAGACTGCACACTGGATAGCTGGGAGGTCTGGAAAGCATCTCTTCCTCACTGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G20400.2 (Glycine max), 3'ss of exon 4
attttatccttccagcacgcttagaaattct-tgttatgt------tgcatgtattttatttgcttattagtttgttacaaaatttctgttgcctctgttcccacagCTTCCATTCCTTTGTGGTCTTCCTTTTCTGGAGAAAAGAGCATCACAGACTGCACACTGGATAGCTGGGAGGTCTGGAAAGCATCTCTTCCTCACTGACA
| || ||| | | ||| | |||| | ||||| |||| | |||| | || | |||| || | | || |||| |||||||||| ||||| ||||||||||| || |||| ||||||||| | |||||||| | | || ||||| ||||| |||||||||||||||| ||||
-----gctttgttagtttgctcatagattttatgttgggcatgaagtgcatatattggacttgcaatattgtctcttactg--ctttttatctttcggttcttgtagCTTCCATTTCTTTGCGGTCTTCCTTTCCTTGAGAGAAGAGCATCTGAAACTGCACATTTAGTTGCAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACA
upper sequence: Vv11s0052g01660.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G25620.1 (Glycine max), 3'ss of exon 5
-attttatccttccagcacgcttagaa-attcttgttatgt--tgcatgtattttatttgcttattagtttgttacaaaatttctgttgcctctgttcccacagCTTCCATTCCTTTGTGGTCTTCCTTTTCTGGAGAAAAGAGCATCACAGACTGCACACTGGATAGCTGGGAGGTCTGGAAAGCATCTCTTCCTCACTGACA
||| | || | | | ||| | | ||| ||||| |||| | |||| | || | | | | || | | | | |||| |||||||||| ||||| ||||||||||| || |||| ||||||||| | || ||||| | | || ||||| ||||| |||||||||||||||| ||||
ggctttggtagttt-gctcattgattttattttggacatgaagtgcatatattggacttgc--aatattgtctcttagtgcttttatcgtttg-gttcttgtagCTTCCATTTCTTTGCGGTCTTCCTTTCCTTGAGAGAAGAGCATCTGAAACGGCACATTTAGTTGCAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttatttgcttattagtttgttacaaaatttctgttgcctctgttcccacagCTTCCATTCCTTTGTGGTCTTCCTTTTCTGGAGAAAAGAGCATCACAGACTGCACACTGGATAGCTGGGAGGTCTGGAAAGCATCTCTTCCTCACTGACA
ttgcctctgttccc CT-rich tract
ttattagtttgttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attttatccttccagcacgcttagaaattcttgttatgttgcatgtattttatttgcttattagtttgttacaaaatttctgttgcctctgttcccacagCTTCCATTCCTTTGTGGTCTTCCTTTTCTGGAGAAAAGAGCATCACAGACTGCACACTGGATAGCTGGGAGGTCTGGAAAGCATCTCTTCCTCACTGACA
- - - -ccttcca
- - - - - - - gcacgct
- - - - - - - - - - - agaaatt
- - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa