Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttcagtcattagtttaatggttgtagctcctgaaaatcaacatgtatcttgaatcattcttctttccatttttctttttagTATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTTAGCCGTGTATGTTGCATTATTCATGGTCGCCATAGAAGGCATTTTGGTA

Basic information

species Vitis vinifera
transcript Vv11s0052g01560.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110695482|gb|EE073547.1|EE073547
EST:     ATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGCAACAAG                         TATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTT
genomic: ATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGCAACAAGgtacttttca ... ttctttttagTATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTT
EST: gi|110713012|gb|EE088559.1|EE088559
EST:     ATATATGTAATACTTTATATGATATTCCTTGGAATTAGTGGCGCAACAAG                         TATAAGAGTTTCAAACGAATTANGGGCTGGACGAACACAAGCAGCACTTTT
genomic: ATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGCAACAAGgtacttttca ... ttctttttagTATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTT
EST: gi|110708165|gb|EE085398.1|EE085398
EST:     ATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGCAACAAG                         TATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTT
genomic: ATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGCAACAAGgtacttttca ... ttctttttagTATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctgaaaatcaacatgtatcttgaatcattcttctttccatttttctttttagTATAAGAGTTTCAAACGAATTAGGGGCTGGACGAACACAAGCAGCACTTTTAGCCGTGTATGTTGCATTATTCATGGTCGCCATAGAAGGCATTTTGGTA
                           tcattcttctttccat  CT-rich tract
                                         atttttcttttta  TA-rich tract