Sequence
atgc intronic sequence ATGC exonic sequencegtgggatgattcttccactccgtcttgaatttgttcatatttttcatttatcaccaaacttaacttttctctaattcatatttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G12850.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------gtgggatgattcttccactccgtcttgaatt--tgttcatatttttcatttatcaccaaacttaacttttctctaattcatatttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
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gtgaagttctaccttatcttcttcatgtatttttccttttatttgaagatttttaatagtcactcattttagtttgtcaacagtcaatactaaaaagcctttttttccccttttatttatattgcttttgctcttctctcagACATGTCATCAATGGCGTTTATTGAACCACTTCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCTCTCAAAGCCATTGTCAGATGCAGA
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------gtgggatgattcttccactccgtcttgaa--tttgttcatatttttcatttatcaccaaacttaacttttctctaattcatatttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
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gtgagagttctaccatatcttcatctttttttacttttattgagttaagattcttttatactgtctctcattttaatatgtcaacagttaatactaaaaagctgcttttctttttcatttttccttttgatttatgcttcttcg-ttcttctctcagACATGTCATCAATGGCGTTTATTGAACCACTTCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTTCTCTCAAAGCCATTGTCAGATGCAGA
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 4
-------------------------gtgggatg--attcttccactccgtcttgaatttgttcatatttttcatttatcaccaaacttaacttttctctaattcat--atttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
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gttaggcttccactaataataattaataagctgcaattctttgttttcctttt----ttgtttttcattttcctttgtcattgatgtttcttccattatatttgattggattcagATATGTCATCAATGGCATTTATCGAACCACTACCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTTCACTCAAAGCCGTTGTTGGATGCAGA
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G21450.1 (Glycine max), 3'ss of exon 5
-------------------------gtgggatgattcttccactccgtcttgaatttgttcatatttttcatttatcaccaaacttaacttttctctaattcatat--ttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
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gttaggcttccactaagaataatggataagctgcaatttttagttttcct--attttgtatttcattttcctttgtcattgatgtttcttccaatatgttttatttcattcagATATGTCATCAATGGCTTTTATTGAACCACTACCTGTGATTGACTTTGTTGCTCAAATTTTGGGACAAGATGTGCACTCAAAGTTGTTGTCGGATGCGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttcatatttttcatttatcaccaaacttaacttttctctaattcatatttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
ctctaat putative branch site (score: 3)
cttttctctaattc CT-rich tract
atatttttcatttatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggatgattcttccactccgtcttgaatttgttcatatttttcatttatcaccaaacttaacttttctctaattcatatttcagATATGTCATCAACTGCATTCATTGAACCATTACCTGTTATTGACTTTGTGGCTCAACTTTTGGACAAAGATGTATTTTCAAGGCCATTGTCAGATGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG