1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...accctgacccgtactagacctgcatacttaccatctttacttcaattatcttcttaacagttgggttttgatgaacagggactatttttaatctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGCTGCCTTGCTCTCATTTCTTCCATAGTGAGTGTGTGGATAAATGGCTGA
species | Vitis vinifera |
transcript | Vv11s0016g04450.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGGAGCGGGAACAGAAAAGGAGCGTGCTATCTCAGGGGAAGATGCT GTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGEST: gi|110364081|gb|EC927724.1|EC927724
genomic: TTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCTgtaagtcgtg ... atctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAG
EST: TTGTGGGAGCGGGAACAGAAAAGGAGCGTGCTATCTCAGGGGAAGATGCT GTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGEST: gi|156737947|gb|EV242068.1|EV242068
genomic: TTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCTgtaagtcgtg ... atctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAG
EST: TTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCT GTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGEST: gi|34546148|gb|CF514380.1|CF514380
genomic: TTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCTgtaagtcgtg ... atctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAG
EST: TTGTGGGAGCGGGAACAGAAAAGGAGCGTGCTATCTCAGGGGAAGATGCT GTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAG
genomic: TTGTGGGAGCGGGAACAGAAAAGGAGCGCGCTATCTCAGGGGAAGATGCTgtaagtcgtg ... atctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAG
ttatcttcttaacagttgggttttgatgaacagggactatttttaatctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGCTGCCTTGCTCTCATTTCTTCCATAGTGAGTGTGTGGATAAATGGCTGA
actatttttaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accctgacccgtactagacctgcatacttaccatctttacttcaattatcttcttaacagttgggttttgatgaacagggactatttttaatctgtgcagGTTTGTTGCATTTGCTTGACAAGATATGCAGATGATGATGAGCTGAGGGAGCTGCCTTGCTCTCATTTCTTCCATAGTGAGTGTGTGGATAAATGGCTGA
-ccctgac
- - - - - - - - - cctgcat
- - - - - - - - - - - - - - - ccatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagttgg