Sequence
atgc intronic sequence ATGC exonic sequencegttaagactcaatcatgttttgttttgttctttatctccatatgaatgcagctctgattcacatgttggtatccagTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G35310.1 (Glycine max), 3'ss of exon 5
gttaagactcaatcatgttttgttttgttctttatctccatatgaatgcagctctgattcacatgttggtatccagTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATG
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gtaagcatttgct--tgttagcttttatgtataatcgcagggtgcatt--attctgattagcattctggtg-ccagCAATATTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCAGCGGTGAGAGGACTTATGACAAACCTCCAAGAGTAAAG---
upper sequence: Vv11s0016g04210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G04420.2 (Glycine max), 3'ss of exon 4
gttaagactcaatcatgttttgttttgttctttatctccatatgaatgcagctctgattcacatgttggtatccagTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATG
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gtaagcatttgct--tgttagcttttatgtataattgcagggtgcatt--attctgaatagcattctgatg-ccagCAATGTTGACAAGCTCCGGGACTTTATTAAGAATGTTTATGTGGATAGAAGATTCAGCGGTGAGAGGACCTATGACAAACCTCCAAGAGTAAAG---
upper sequence: Vv11s0016g04210.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G09750.1 (Glycine max), 3'ss of exon 2
gttaagactcaatcatgttttgttttgttctttatctccatatga-atgca---gctctgattcacatgttggtatccagTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATG
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gtaactacttg-ttatatgcttttatgtacaattacaggatgcatcattcatttattctgattagcatggttggtgccagtaatgttgacagGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttgttctttatctccatatgaatgcagctctgattcacatgttggtatccagTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATG
ctctgat putative branch site (score: 4)
ttctttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaagactcaatcatgttttgttttgttctttatctccatatgaatgcagctctgattcacatgttggtatccagTAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG