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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctctgttttccttttatcttcctctgtttttttatttattttttcttgctagtgaaatttgattttatttgaaaatgaactttcagAGAAAGAGACTGCCGCGGCTGTTTTGGGTGTCAGCAGTGGCTCCAATCGTGACGGTGTTAATTGGCTGCATTATTGCTTACTTCCTTCGCGGCCATGATG

Basic information

species Vitis vinifera
transcript Vv11s0016g04160.t01
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttattttttcttgctagtgaaatttgattttatttgaaaatgaactttcagAGAAAGAGACTGCCGCGGCTGTTTTGGGTGTCAGCAGTGGCTCCAATCGTGACGGTGTTAATTGGCTGCATTATTGCTTACTTCCTTCGCGGCCATGATG
                         atttgat  putative branch site (score: 5)
                                                ctttc  putative PPT
                       aaatttgattttattt  TA-rich tract