Sequence
atgc intronic sequence ATGC exonic sequencegcatgcatttatttttctaccatttcattttgctttacagaaagaactagactccctcttatacacatttttatgtgatggaggcatttatttgatattttttcatcatgtcttccttcattgacttttatggtatgtctaatggtcacagGATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G03760.1 (Glycine max), 3'ss of exon 4
gcatgcatttatttttctaccatttcatttt--gctttacagaaagaa----ctagactccctcttatacacatttttatgtgatggaggcatttatttgatatttt--------ttcatca-tgtcttc----cttcattgact-----tttatggtatgtctaatggtcacagGATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTG
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gtataaataagttcacaagttatttgatataaagttttgcaaccataaactccttagtcctttcaattagttgatttgccctgttggagctagttgttttctgttttgggctttatccattagtgttatttgcacctcattcacactaaatttgatgcctgtttggtgcatgcagGATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG
upper sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G35860.1 (Glycine max), 3'ss of exon 3
gcatgcatttatttttctaccatttcattttgctttacagaaagaactagactccctcttatacacatttttatgtgatggaggcatttatttgatattttttcatcatgtcttcctt-cattgacttttatggtatgtctaatggtcacagGATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTG
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--------------------------------------------------ttgccctgtcggagctagttgttttctcttttgggctttatccaatagtatcatct-gtgcctcattcacactaaatttgatgcc-tgtttgatgtatgcagGATCATGTTGAAGCTAAGGTTGTTGTATCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttttcatcatgtcttccttcattgacttttatggtatgtctaatggtcacagGATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTG
gtctaat putative branch site (score: 3)
acttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatgcatttatttttctaccatttcattttgctttacagaaagaactagactccctcttatacacatttttatgtgatggaggcatttatttgatattttttcatcatgtcttccttcattgacttttatggtatgtctaatggtcacagGATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT