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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtaaagaatgtattagaccaatttgttttgcaaaccatattactttacagtgtccatttttctggatcttttgtgttcttaagcggtggattggcttgggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACATGAGGAACTGTTATCTGTTGCAGAACCACTTCTCTCTGACCTACCCAGTG

Basic information

species Vitis vinifera
transcript Vv11s0016g02870.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02870.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: LOC_Os01g53700.1 (Oryza sativa), 3'ss of exon 4
gtaagttgtaaagaatgtattagaccaatttgttttgcaaaccatattactttacagtgtccatttttctggatcttttgtgttcttaagcggtggattggcttgggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACATGAGGAACTGTTATCTGTTGCAGAACCACTTCTCTCTGACCTACCCAGTG
                            |  | ||    |||  |   | |||| | |||   ||| |  | |  |   | || |||   |    | |||  |||   | |||||  |||||| || || ||| ||||||| |||||||| ||||| ||||||||||| |||||  | ||  |||| || |||||||| || || || |||||||
---------------------------gtaagattcatcaact-tgcca-tttatattgtttttttgttagaaagt---gcgtgctttgacatatgcttgcattgatgaattcagGAAAATTACACAGCACCTAGGATGGTCCTTGCGGCATCTGGAGTTGAACATGATGAACTAGTTTCAATTGCTGAGCCACTTCTGTCGGATCTTCCCAGTG

upper sequence: Vv11s0016g02870.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G36040.1 (Glycine max), 3'ss of exon 4
--------------gtaag--ttgtaaagaatgtattagaccaatttgttttgcaaaccatattactttacagtgtccatttttctggatcttttgtgttcttaagcggtggattggcttg-ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACATGAGGAACTGTTATCTGTTGCAGAACCACTTCTCTCTGACCTACCCAGTG
               |||   || ||    |  || |     |||  || ||      |     | |||| ||  ||  | |     | |||||    ||||||   |    ||    ||  |  |  ||||   || ||||| || |||||||| |||||||| || ||||| ||||||||||||||| |||||||| |||||||||| ||| | ||||| ||||||||||
gtaagtcttcataattaatctttatatgttacttaattatttaatacgtgttcattgtctctcaaatttaaagattctttataagatgttctttacctttcttataagacttatacttttatgaaacatcagGAGAACTATACGGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATGAGGAATTGTTATCTATTGCAGAACCTCTTTTGTCTGATCTACCCAGTG

upper sequence: Vv11s0016g02870.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G03580.1 (Glycine max), 3'ss of exon 3
gtaagttgtaaagaatg----tattagaccaatttgttttgcaaaccatattactttacagtgtccatttttctggatctttt-----gtgttcttaagcggtggatt--ggcttgggcattt---------cagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACATGAGGAACTGTTATCTGTTGCAGAACCACTTCTCTCTGACCTACCCAGTG
||||||  | || | |     |  || |  | ||  ||    ||  | | ||  |||    | || |  |||   ||| ||||      ||||||| | |  |    |  | ||||  | |||         |||   || ||||| || |||||||| |||||||| || ||||| ||||||||||||||| ||||||||||||||||||| ||  | ||||| ||||||||||
gtaagtcttcaaaattaatctttatatattacttaattacttaatacgtgttcatttgtc-tctcaaaatttaaagattttttataagatgttcttcacctttcttataagacttgaacttttatgaaacatcagGAGAACTATACAGCACCTCGGATAGTACTTGCAGCATCTGGTGTTGAACATGAGGAATTGTTATCTGTTGCAGAACCTCTCTTGTCTGATCTACCCAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32247970|gb|CD713789.1|CD713789
EST:     AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
EST: gi|71879335|gb|DT028390.1|DT028390
EST:     AATCTGCAATAAACAAATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
EST: gi|71879768|gb|DT028823.1|DT028823
EST:     AATCTGCAATAAACAAATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
EST: gi|71878964|gb|DT028019.1|DT028019
EST:     AATCTGCAATAAACAAATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
EST: gi|77587546|gb|DV222937.1|DV222937
EST:     AATCTGCAATAAACAAATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
EST: gi|32268962|gb|CD718121.1|CD718121
EST:     AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACAT
EST: gi|46917512|gb|CN546841.1|CN546841
EST:     AATCTGCAATAAACAAATTAGACAGCACAATTTTGGAGGAGTTTGTTGCT                         TTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACA
genomic: AATCTGCAATAAACAGATTAGACAGCACAATTTTGGAGGAGTTTGTTGCTgtaagttgta ... ggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttttctggatcttttgtgttcttaagcggtggattggcttgggcatttcagTTAAATTATACTGCTCCTCGGATGGTACTTGCGGCTTCTGGGGTTGAACATGAGGAACTGTTATCTGTTGCAGAACCACTTCTCTCTGACCTACCCAGTG
            atctttt  TA-rich tract