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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaaagagaactattttaaagttttttaaagttggtgattatcatttgtaaacagaatgttctaaggttcatgttttcttcatagttggtcacaccttttggtgggcttgttaagtacactttatgtgtctctttgctgttctgctttgagtgttgaacagATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCAAAAGCTACAGGAAATGGCAATCCTGCTTGTTCAATTGTCAAACCATATG

Basic information

species Vitis vinifera
transcript Vv11s0016g02550.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134123|gb|CB919461.1|CB919461
EST:     ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAG                         ATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
genomic: ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAGgtaggaaaga ... tgttgaacagATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
EST: gi|27755257|gb|CB036012.1|CB036012
EST:     ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAG                         ATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
genomic: ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAGgtaggaaaga ... tgttgaacagATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
EST: gi|37190697|gb|CF610046.1|CF610046
EST:     ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAG                         ATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
genomic: ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAGgtaggaaaga ... tgttgaacagATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
EST: gi|71860554|gb|DT009609.1|DT009609
EST:     ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAG                         ATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA
genomic: ATGCATTGTTTCTTCTCTCCACCAATGACAAAACCATCAAGTTTTGGAAGgtaggaaaga ... tgttgaacagATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttaagtacactttatgtgtctctttgctgttctgctttgagtgttgaacagATCCAGGAAAAGAAGGTCAAGAAAATTTGTGACATGAATATAGACCCTTCAAAAGCTACAGGAAATGGCAATCCTGCTTGTTCAATTGTCAAACCATATG
            actttat  TA-rich tract