Sequence
atgc intronic sequence ATGC exonic sequence...tcttcaggttattctggaatgcctgcatgtgatcctacatttttgacactttaacttttagaaagaattgatgctcatctattgcttttctttgtttcagATTTTGCTCAAGGGTGCTAATGGGGATGAGTTGAAGAAAGTGAAACATGTGATCCAGTATGGAGTTTTCGCAGCTTACCACTTAGCTCTTGAGACATCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G05000.1 (Glycine max), 3'ss of exon 7
tcttcaggttattctggaatgc--ctgcatgtgatcctacatttttgacactttaacttttagaaagaattgatgctcatctattgcttttctttgtttc--agATTTTGCTCAAGGGTGCTAATGGGGATGAGTTGAAGAAAGTGAAACATGTGATCCAGTATGGAGTTTTCGCAGCTTACCACTTAGCTCTTGAGACATCTT
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---aggacttgtaaagaaaagttgttgtttgttgcttttctatttctcctcctctatatttttatttatttattatgtgtatttt-ttttgctttactttgaagATCTTGCTGAAGGGTGCCAATGGGGATGAGTTGAAGAAGGTGAAACATGTGATCCAATATGGAATCTTTGCAGCCTATCATCTGGCGCTGGAGACATCTT
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G17510.1 (Glycine max), 3'ss of exon 4
tcttcaggttattctggaatgcc----tgcatgtgatcctacatttttgacactttaacttttagaaagaattgatgctcatctattgcttttctttgtttcagATTTTGCTCAAGGGTGCTAATGGGGATGAGTTGAAGAAAGTGAAACATGTGATCCAGTATGGAGTTTTCGCAGCTTACCACTTAGCTCTTGAGACATCTT
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----taatttgtaaagaaaagttgagttgtttgttgctttactatttctccccctccatatttttatttatttattatgtgtatttttttgctttactttgaagATCTTGCTGAAGGGTGCCAATGGGGATGAGTTGAAGAAGGTGAAACATGTGATCCAATATGGAATCTTTGCAGCCTATCATCTGGCACTGGAGACATCTT
upper sequence: Vv11s0016g00360.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G33240.1 (Arabidopsis thaliana), 3'ss of exon 5
--------------tcttcaggttattctggaatg------cctgcatgtgatcctacatttttg-acactttaacttttagaaagaattgatgctca-tctattgctt---ttctttgtttcagATTTTGCTCAAGGGTGCTAATGGGGATGAGTTGAAGAAAGTGAAACATGTGATCCAGTATGGAGTTTTCGCAGCTTACCACTTAGCTCTTGAGACATCTT
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gtaagttccacaacattttaaggtgttttaagacattagatccttgacctgttattatgactatgcatattgtatgtctgatcaggaaataatcttaagtatggtgcttgatctgtctttctcagATATTGCTCAAGGGGGCACATGAAGATGAGCTAAAGAAGGTGAAACATGTGATTCAGTATGGAGTTTTTGCAGCATATCACTTGGCTCTTGAGACATCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acactttaacttttagaaagaattgatgctcatctattgcttttctttgtttcagATTTTGCTCAAGGGTGCTAATGGGGATGAGTTGAAGAAAGTGAAACATGTGATCCAGTATGGAGTTTTCGCAGCTTACCACTTAGCTCTTGAGACATCTT
tctattgcttttcttt CT-rich tract
ttaacttttagaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttcaggttattctggaatgcctgcatgtgatcctacatttttgacactttaacttttagaaagaattgatgctcatctattgcttttctttgtttcagATTTTGCTCAAGGGTGCTAATGGGGATGAGTTGAAGAAAGTGAAACATGTGATCCAGTATGGAGTTTTCGCAGCTTACCACTTAGCTCTTGAGACATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
-cttcagg
- - - - - attctgg
- - - - - - - - - - -cctgcat
- - - - - - - - - - - - - - - - -cctacat
- - - - - - - - - - - - - - - - - - - - - ttgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcatc