1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgacctggcaatcttaactcagtttcattccaaaaatccatctgttagcagagcatatattcacttaaagcatacttctattacacttcaatgtttcagCTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCTGAGGGCACATTCAGACCACAGAGACTTTTACAAATAGCAGACAG
species | Vitis vinifera |
transcript | Vv11s0016g00340.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCGCTCTGGAAAGACTCAGCTCTGCCACACACTCTGTGTCACTTGCCAA CTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCT
genomic: TCCGCTCTGGAAAGACTCAGCTCTGCCACACACTCTGTGTCACTTGCCAAgtaagagctc ... aatgtttcagCTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCT
ttagcagagcatatattcacttaaagcatacttctattacacttcaatgtttcagCTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCTGAGGGCACATTCAGACCACAGAGACTTTTACAAATAGCAGACAG
atatattcacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacctggcaatcttaactcagtttcattccaaaaatccatctgttagcagagcatatattcacttaaagcatacttctattacacttcaatgtttcagCTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCTGAGGGCACATTCAGACCACAGAGACTTTTACAAATAGCAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - -tcattcc
- - - - - - - - - - - - - - - - aaaaatc
- - - - - - - - - - - - - - - - - - - - - ctgttag
- - - - - - - - - - - - - - - - - - - - - - - - - -gagcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagca