Sequence
atgc intronic sequence ATGC exonic sequence...aatgtccatctatgtcgtgaatatgttcttgaaatttataatgcatgcatgtggtagacaaggattattaatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G167318_T01 (Zea mays), 3'ss of exon 2
-aatgtccatctatgtcgtgaatatgttcttgaaatttataat-gcatg-catgtggtagacaaggattattaatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG
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atcttaccatttttttcttgtataaaaatacaaaatacaaaattagatgacacatcttcaacaatccattctgattgagtc-gttcaatttctgttac--cagAAACTTATTGCTTATGACCATTTAGAAGGCGATCCTGGTTTAGAAGGTGGTAAAAATTCCCCAATATTTACAGACATCCTGAACATGGTATGTGGTTGCG
upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G17610.1 (Glycine max), 3'ss of exon 3
-aatgtccatctatgtcgtgaatatgttct-tgaaatttataatgcatgcatgtggtag------acaaggattat-taatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG
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gtacgtgcatgctt-tcttgaatctgatcaataaggtgttcaaccagtccttatggcatttcttcatgctaactaggtcacttactatgtgtaactattgttaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTCCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG
upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G04890.1 (Glycine max), 3'ss of exon 3
-aatgtccatctatgtcgtgaatatgttct-tgaaatttataatgcatgcatgtggtaga----caag---gattattaatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG
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gtacgtgcatgctt-tcttgactctgatcaataagatgttcaaccagtccttatggcacttcttcatgctaaatagttcacttactatgcgtaactgttgtgaatacagAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcatgtggtagacaaggattattaatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG
attattaatttattct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgtccatctatgtcgtgaatatgttcttgaaatttataatgcatgcatgtggtagacaaggattattaatttattctatttaattccaataagtacagAAACTCATCGCATATGAGCATTTAGAGGGTGATCCTGGTCTAGATGGTGGTACAAATGCACCGCTGTTTACAGACATTCTGAATATGGTTTGCAGTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -ccatcta
- - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagga