1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cactttcagtaagttgtggttgactttagaattgtagtttgctttgttgtcatccaatatataaacttctgactcgttttcctacaactattttgtgcagGCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTACAAGTATCTGG
species | Vitis vinifera |
transcript | Vv10s0116g01480.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCTGCTGCGGCATCCGTACCGCGAGGATACACAACCACTGCAAAAGAG GCATTACTTCTTGGAGGAGGATCAAAAATTCTATGGAATGTTGGTCACTACEST: gi|71862364|gb|DT011419.1|DT011419
genomic: GACCTGCTGCGGCATCCGTACCGCGAGGATACACAACCACTGCAAAAGAGgtgtttacag ... ttttgtgcagGCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTAC
EST: GACCTGCTGCGGCATCCGTACCGCGAGGATACACAACCACTGCAAAAGAG GCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAGTGTTGGTCACTACEST: gi|161716165|gb|FC066491.1|FC066491
genomic: GACCTGCTGCGGCATCCGTACCGCGAGGATACACAACCACTGCAAAAGAGgtgtttacag ... ttttgtgcagGCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTAC
EST: GACCTGCTGCGGCATCCGTACCGCGAGGATACACAACCACTGCAAAAGAG GCATTACTTCTTGGAGGAGGATCAAAAATTCTATGGAATGTTGGTCACTAC
genomic: GACCTGCTGCGGCATCCGTACCGCGAGGATACACAACCACTGCAAAAGAGgtgtttacag ... ttttgtgcagGCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTAC
gttgtcatccaatatataaacttctgactcgttttcctacaactattttgtgcagGCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTACAAGTATCTGG
ttctgac putative branch site (score: 2)
ctatttt putative PPT
aatatataaacttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactttcagtaagttgtggttgactttagaattgtagtttgctttgttgtcatccaatatataaacttctgactcgttttcctacaactattttgtgcagGCATTACTTCTTGGAGGAGGATCAAAAATTATACGGAATGTTGGTCACTACAAGTATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctga