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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactagatgatgcaacaattttagctgcttttcagcaaaacttttgcacattttctagtaaagataaaacagttaaggacattgctttttgggtggttgttgcagATGGAGAACAGTTCTTATTTCATTGCATCTAGGCACAGGCTAAGTGCCTTCTTCTCTCTCATCTTCCGTTTTTCTTCGTGTCATCACCCCTTACTTGCAT

Basic information

species Vitis vinifera
transcript Vv10s0116g00830.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G38890.1 (Glycine max), 3'ss of exon 3
------gtactagatgatgcaacaattttagctgcttttcagcaaaacttttgcacattttctagtaaagataaaacagttaaggacattgctttttgggtggttgttgcagATGGAGAACAGTTCTTATTTCATTGCATCTAGGCACAGGCTAAGTGCCTTCTTCTCTCTCATCTTCCGTTTTTCTTCGTGTCATCACCCCTTACTTGCAT
      || | |   || | | ||  |||     ||    ||   | |||    ||||| |    |  | | | | ||        ||| |||||||   ||||  ||||||||||| |||||||||||||||  |||||||||||| |  || |||||| |||||||||| || ||||| |||||||| ||||||||||| ||||| ||||
gtgaatgtgcaaatagaggtagca-ctttgtaaactagctagactaccttgctgacattattctttcgaaacatatca--------cat-gctttttc--tggtcattgcagATGGAAAACAGTTCTTATTTCGGTGCATCTAGGCATAAACTCAGTGCCGTCTTCTCTCTTATATTCCGATTTTCTTCTTGTCATCACCCTTTACTAGCAT

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 4
gtactagatgatgcaacaattttagctgcttttcagcaaaacttttgcacattttctagtaaagataaa----acagttaaggacat-tgctttttgggtggttgttgcagATGGAGAACAGTTCTTATTTCATTGCATCTAGGCACAGGCTAAGTGCCTTCTTCTCTCTCATCTTCCGTTTTTCTTCGTGTCATCACCCCTTACTTGCAT
            | | || ||||   |     |   | |   |  || ||||| |    | || | | |    | | | ||  | |  ||||||||   ||||  ||||||||||| |||||||||||||||  |||||||||||| |  ||||||||  |||||||||| || ||||| |||||||| ||||||||||| ||||| ||||
------------gtagcactttttaatctagctagactactttgctg-acattattctttcaaaacatatctcatattcaattaaacatgctttttc--tggtcattgcagATGGAAAACAGTTCTTATTTCGGTGCATCTAGGCATAAACTAAGTGCTGTCTTCTCTCTTATATTCCGCTTTTCTTCTTGTCATCACCCTTTACTAGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctagtaaagataaaacagttaaggacattgctttttgggtggttgttgcagATGGAGAACAGTTCTTATTTCATTGCATCTAGGCACAGGCTAAGTGCCTTCTTCTCTCTCATCTTCCGTTTTTCTTCGTGTCATCACCCCTTACTTGCAT
     tagtaaagataaaa  TA-rich tract