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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctttgctccatttcattagaaacctatccatattccatatagtttgtagatacctaagcataaacatccaagatatgactttgctgactcaaatcttatttcctatttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTGATGGTATCGCCAGAGGACTTCTTTACCTTCATGAGGACTCCCGGCTTAA

Basic information

species Vitis vinifera
transcript Vv10s0116g00170.t01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265213|gb|CD716802.1|CD716802
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|30324695|gb|CD007957.1|CD007957
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|32268591|gb|CD717750.1|CD717750
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|32269309|gb|CD718468.1|CD718468
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|32269226|gb|CD718385.1|CD718385
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|30325436|gb|CD008698.1|CD008698
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|32248381|gb|CD714200.1|CD714200
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|32267557|gb|CD716520.1|CD716520
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
EST: gi|32269958|gb|CD719117.1|CD719117
EST:     GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTG                         ATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG
genomic: GCTCATATATGAGTTCATGCCCAACAAAAGCCTTGATATCTTTATATTTGgtttgttctt ... ttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatccaagatatgactttgctgactcaaatcttatttcctatttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTGATGGTATCGCCAGAGGACTTCTTTACCTTCATGAGGACTCCCGGCTTAA
                                tcttatttcctattt  CT-rich tract
                             aaatcttatttcctat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttctttgctccatttcattagaaacctatccatattccatatagtttgtagatacctaagcataaacatccaagatatgactttgctgactcaaatcttatttcctatttaatttcagATGCAGATAAAAGGCAACAACTCAATTGGGAGATATGCCATAACATTATTGATGGTATCGCCAGAGGACTTCTTTACCTTCATGAGGACTCCCGGCTTAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA