Sequence
atgc intronic sequence ATGC exonic sequence...aaaccatatacataccttgttgatttaagttggtcttcccaccctatgtttatgtctgtagatgctagctttgactcaaatttgtaatttggcaatgcagGTATGAGCAGAGCTTATCAGTTCTAAAACATGCAAAACATAGCAAGGTGGGGATGATAACAAAATCATCTATAATGTTGGGTCTTGGGGAATCTGATGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G24430.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------aaaccatatacata----ccttgttga---tttaagt-tggtcttcccaccctatgtttatgtctgtagatgctagctttgactcaaatttgtaatttggcaatg---cagGTATGAGCAGAGCTTATCAGTTCTAAAACATGCAAAACATAGCAAGGTGGGGATGATAACAAAATCATCTATAATGTTGGGTCTTGGGGAATCTGATGAT
|| ||||| ||| |||| ||| || | | | || | || | | ||| | ||| | | | | | | | |||| ||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| | ||||||||| |||| ||||| ||||||||||||
gtaagctgcattgttgatccaactgctttgtaatatcaaccataaaccattgcttcttcaaaagtaaaataaaagctaatatatatatataatgtccttaatgagaattgaggaatagttgttttactggaaatatatata-acgaatgtataaatatatttatttcttttattttgcattgttacagGTATGAGCAAAGCTTGTCAGTTCTAAAACATGCAAAACATAGCAAGGAGGGTATGATAACAAAAACTTCTATAATGCTGGGCCTTGGAGAATCTGATGAT
upper sequence: Vv10s0071g01020.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G42600.1 (Glycine max), 3'ss of exon 6
aaaccatatacataccttgttgatttaa-gttggtcttcccaccctatgtttatgtctgtagatgctagc---tttgactcaaatttgtaatttggcaatgcagGTATGAGCAGAGCTTATCAGTTCTAAAACATGCAAAACATAGCAAGGTGGGGATGATAACAAAATCATCTATAATGTTGGGTCTTGGGGAATCTGATGAT
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--tccttaatgaggaatagttgttttgctggaaatatatataatgaatgtataaataaataagtataaatatatttatgtcttttttgttgtatggt--tacagGTATGAGCAAAGCCTGTCAGTTCTAAAACATGCAAAACATAGCAAGGAGGGTTTGATAACAAAAACTTCTATAATGCTGGGCCTTGGAGAAACTGATGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtttatgtctgtagatgctagctttgactcaaatttgtaatttggcaatgcagGTATGAGCAGAGCTTATCAGTTCTAAAACATGCAAAACATAGCAAGGTGGGGATGATAACAAAATCATCTATAATGTTGGGTCTTGGGGAATCTGATGAT
ctttgac putative branch site (score: 4)
tcaaatttgtaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaccatatacataccttgttgatttaagttggtcttcccaccctatgtttatgtctgtagatgctagctttgactcaaatttgtaatttggcaatgcagGTATGAGCAGAGCTTATCAGTTCTAAAACATGCAAAACATAGCAAGGTGGGGATGATAACAAAATCATCTATAATGTTGGGTCTTGGGGAATCTGATGAT
aaaccat
- - - - - catacct
- - - - - - - - - - - - - - - - - - -cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctag