Sequence
atgc intronic sequence ATGC exonic sequence...accatttgcatgatcttaatatttttagtacaaattatgcctgatgtatagtaattctttttctactaatcttacaattttatgtggtactttttcgtagGTTATCAATGTTTCATCACCCAATACCCCTGGATTGCGGAAGCTTCAGGGAAGAAAACAATTGAAGGACCTGGTTAAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA20G23670.1 (Glycine max), 3'ss of exon 4
accatttgcatgatcttaatatttttagtacaaattatgcctgatgtatagtaattctttttcta-ctaatcttacaattttatgtggtactttttcgtagGTTATCAATGTTTCATCACCCAATACCCCTGGATTGCGGAAGCTTCAGGGAAGAAAACAATTGAAGGACCTGGTTAAGAAG
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ccaattttttttaatcaagcatctgtgcagcttactacaaatt-tgtaagacaaatgtttggtaatctattctgtttaatgtttttaatatccttttctagGTGATTAATGTTTCATCACCCAATACCCCTGGTTTGCGCATGCTTCAAGGAAGAAAGCAATTGAAGGATCTTGTGAAGAAG
upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA10G43220.1 (Glycine max), 3'ss of exon 4
accatttgcatgatcttaatat-ttttagtacaaattatgcctgatgtatagtaattctttttctactaatcttacaattttatgtggtactttttcgtagGTTATCAATGTTTCATCACCCAATACCCCTGGATTGCGGAAGCTTCAGGGAAGAAAACAATTGAAGGACCTGGTTAAGAAG
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aacttcccaaggatcataagctattgcaataaggtccattgctattaaagtaggttccattgattgtttttatttggatttcac-taatatccttttctagGTGATTAATGTTTCATCACCCAATACCCCTGGTTTGCGCATGCTTCAAGGAAGAAAGCAATTGAAGGATCTAGTGAAGAAG
upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT5G23300.1 (Arabidopsis thaliana), 3'ss of exon 4
--accatttgcatgatcttaatatttttagtacaaattatgcctgatgtatagtaattctttttctactaatcttacaattttatgtggtactttttcgtagGTTATCAATGTTTCATCACCCAATACCCCTGGATTGCGGAAGCTTCAGGGAAGAAAACAATTGAAGGACCTGGTTAAGAAG-------------------
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gtacaaacttctt-accatgatatatcgaacatgaatttgatctaatccaccgtagaattctttgttcctaattttcattttt--------ctcttc---agGTGATCAATGTTTCATCACCCAATACTGCAGGACTGCGCATGCTTCAAGGAAGGAAACAGTTGAAGGACCTTGTAAAGAAGGTTCAAGCTGCTCGGGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatagtaattctttttctactaatcttacaattttatgtggtactttttcgtagGTTATCAATGTTTCATCACCCAATACCCCTGGATTGCGGAAGCTTCAGGGAAGAAAACAATTGAAGGACCTGGTTAAGAAG
tactttttc CT-rich tract
taatcttacaatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
accatttgcatgatcttaatatttttagtacaaattatgcctgatgtatagtaattctttttctactaatcttacaattttatgtggtactttttcgtagGTTATCAATGTTTCATCACCCAATACCCCTGGATTGCGGAAGCTTCAGGGAAGAAAACAATTGAAGGACCTGGTTAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
-ccatttg
- - - - catgatc
- - - - - - - - - - - - - - -acaaatt
- - - - - - - - - - - - - - - - - - -tgcctga