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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcataagttggtgatcttctgttggtttggaagaaagattttccattgctattggcttaattggtttttgtctgttttaagGTGTTAGGACTATATGAGTGGTCTGGCTGCAACCCTTTGCCACCAGAGTACTGGCTTTTCCTTTCATTTTTGCCCATGCATCCAG

Basic information

species Vitis vinifera
transcript Vv10s0003g03560.t01
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggaagaaagattttccattgctattggcttaattggtttttgtctgttttaagGTGTTAGGACTATATGAGTGGTCTGGCTGCAACCCTTTGCCACCAGAGTACTGGCTTTTCCTTTCATTTTTGCCCATGCATCCAG
                            gcttaat  putative branch site (score: 4)
                                      tttttgtctgtttt  putative PPT
       aaagatttt  TA-rich tract