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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgattatgaatcattcacatttatggagtgttactgtgctaacttctgtcatgtaacttttccaatgactgttcaaatcaaatggtttcagGTCAAGCATGGCAACTGTGGACCAGTTCAATCAATTGAAGTCCAGAGGCAACTGGTTGCTCGAACCCCAGTCTTTTATAGGTTGGAAAAAATAGAGAATG

Basic information

species Vitis vinifera
transcript Vv10s0003g02730.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GRMZM2G000719_T01 (Zea mays), 3'ss of exon 4
gttttgattatgaatcattcacatttatggagtgtt-actgtgctaacttctgtcatgtaacttttccaa-----tgactgttcaaatc------aaatggtttc-agGTCAAGCATGGCAACTGTGGACCAGTTCAATCAATTGAAGTCCAGAGGCAACTGGTTGCTCGAACCCCAGTCTTTTATAGGTTGGAAAAAATAGAGAATG
       | ||| |  ||  | ||  ||   || || | | ||  |         || |  |||  || |     ||||| ||    ||      |  |  | || |||| ||||||||| ||||||| || ||| | |||||  | || ||||||||||||||| ||||||| ||||| || ||| | ||||| |||| ||| ||  
------gtaatggacaatctaaataaattctgtcttgattatgtcaggaatcaggatctctcttaacccagtatctgactattgtggtctttcttatgttatctctagGTTAAGCATGGCGACTGTGGTCCTGTTGAGTCAATGAAGGTGCAGAGGCAACTGGTTACTCGAACTCCAGTTTTCTATCGTTTGGAGAAAAGAGAAAACA

upper sequence: Vv10s0003g02730.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G29820.1 (Glycine max), 3'ss of exon 5
-------gttttgattatgaatca--ttcacattta-tggagtgttactgtgctaacttctgtcatgtaacttttccaatgactgttcaaatca-----aatggtttcagGTCAAGCATGGCAACTGTGGACCAGTTCAATCAATTGAAGTCCAGAGGCAACTGGTTGCTCGAACCCCAGTCTTTTATAGGTTGGAAAAAATAGAGAATG
        || | |||   | | |  ||  ||  |  |  ||  ||  | | |    || | |  | ||| ||||    | |   || | || |     | |  | ||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||||| |||||||| ||||||||||||||| || ||||| || | || ||||
gttttggattctaattccaagttagtttggcacctgctctagcctttgtttacagttttatttagtttaatttttttgttcaactttaatattagcatcattactgtcagGTCAAGCATGGCAACTGTGGACCCGTTGAATCAATAGAAGTCCAGCGGCAACTTGTTGCTCGTACCCCAGTCTTTTATCGGCTGGAACAATTGGACAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaacttctgtcatgtaacttttccaatgactgttcaaatcaaatggtttcagGTCAAGCATGGCAACTGTGGACCAGTTCAATCAATTGAAGTCCAGAGGCAACTGGTTGCTCGAACCCCAGTCTTTTATAGGTTGGAAAAAATAGAGAATG
                                      aaatcaaat  TA-rich tract