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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcactgagttcatacaagcttaaacaaatatatattcttcaaattactaactcaattctctgtggatctgcaagGTTGCATCATTCACTGGGGAAAAGAAAGCGATCAAAAACTATGATAATAAGCTGCATATTGCGTATGCTTCCACTGTTCAACAAGGGCTGGCCTCAGGCA

Basic information

species Vitis vinifera
transcript Vv10s0003g02540.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02540.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G29380.1 (Glycine max), 3'ss of exon 4
gtaaggcactgag-ttcatacaagcttaaacaaatatatattcttcaaattac-----taactcaattctctgtggatctgcaa---gGTTGCATCATTCACTGGGGAAAAGAAAGCGATCAAAAACTATGATAATAAGCTGCATATTGCGTATGCTTCCACTGTTCAACAAGGGCTGGCCTCAGGCA
||||| ||| ||  || ||   || | | | |   ||   || ||  | |||      |  ||  | |   ||  ||| |  ||   |||||| || || ||||| || || ||||| ||  | || ||| |||||||| |    ||||| |||||| | ||||||||||||||| ||||||||||  
gtaagacacagaaattaatgatagataatatacgcattgttttttgtatttaagcatattccttgacttcttgctgatgtttaaccagGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAGAAATATAATAATAAGTTAAGAATTGCTTATGCTACAACTGTTCAACAAGGGTTGGCCTCAGGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaacaaatatatattcttcaaattactaactcaattctctgtggatctgcaagGTTGCATCATTCACTGGGGAAAAGAAAGCGATCAAAAACTATGATAATAAGCTGCATATTGCGTATGCTTCCACTGTTCAACAAGGGCTGGCCTCAGGCA
                         tactaac  putative branch site (score: 0)
      aaatatatattcttca  TA-rich tract