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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttctgctggtagattgcttttatccatctgaaagctgttggttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT

Basic information

species Vitis vinifera
transcript Vv10s0003g02060.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA15G09490.2 (Glycine max), 3'ss of exon 4
gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttctgctggtagattgcttttatccatctgaaagctgttggttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT
||| |||    |||  | |  || |   ||||| |||  | | |   |||   | || |   |||               ||     |||  ||| ||||||||||| || ||||||||||||||  || | |||||||| || ||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||
gtgagttgcttata--aaccttgtgcaatgattgttacattttgttgtatactttcttgataatt---------------aatatacttgacttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT

upper sequence: Vv10s0003g02060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA13G29520.1 (Glycine max), 3'ss of exon 4
gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttctgctggtagat---tgcttttatccatctgaaagctgttggttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT
                     |||||||   |      |||||    ||||  | | | | | |   | |||| ||     | ||     ||| |||| ||||||||||| || ||||||||||||||  || | ||||| || || ||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||
--------------------gtgagtttctctcaaccattgtgcaactattattacagtttgctatatactttcatgataattaatatacttgatttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT

upper sequence: Vv10s0003g02060.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G18950.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttct--gctggtagattgcttttatccatctgaaagctgttggttttgcac--agGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT
                     | |||    ||  |       |  || | ||||  | |  | |||| |  ||    | |  ||   | |||  | |||    |||| |   ||    ||||||||||||||||| || | | |  | ||||| ||  | || |||||||| ||||||||||| |||||||  ||||||||||||
--------------------gtaagtaaatatcctgtagacggttctaacttctaaggttttggattccaattccttaccataatctttttgtatgtgcgtgtagGAGGAAGTTCCATGATGAGCTTGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407698|gb|CF213325.1|CF213325
EST:     GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGT                         GAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
genomic: GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGTgtgggttttc ... ttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
EST: gi|30255070|gb|CB971517.1|CB971517
EST:     GTTGCTGTAAAAAGGCTTGGGGACGAGGTGATAATTGATGAGGATAAAGT                         GAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
genomic: GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGTgtgggttttc ... ttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
EST: gi|71859913|gb|DT008968.1|DT008968
EST:     GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGT                         GAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
genomic: GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGTgtgggttttc ... ttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
EST: gi|71890043|gb|DT039098.1|DT039098
EST:     GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGT                         GAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA
genomic: GTTGCTGTAAAAAGGCTTGGGGACGAAGTGATAATTGATGAGGATAAAGTgtgggttttc ... ttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttctgctggtagattgcttttatccatctgaaagctgttggttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT
                     ttttat  TA-rich tract