1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttgtgtcaataattaaaaagagcaacatttttttgtggccattgatgcatgtattctgaccgcatctttttttctttgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTACTACTTTATTAG
species | Vitis vinifera |
transcript | Vv10s0003g01700.t01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACTGGATTTACCGTTACTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|30298685|gb|CB975479.1|CB975479
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|110720994|gb|EE097488.1|EE097488
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|110686747|gb|EE064739.1|EE064739
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATTG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|110703644|gb|EE080669.1|EE080669
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|30298746|gb|CB975540.1|CB975540
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTTTGGTTTGGTCCAAACAGCACTTTATGCAGANNNNNNNNACTEST: gi|110688848|gb|EE067872.1|EE067872
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATTG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|110687293|gb|EE064579.1|EE064579
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTEST: gi|351040756|gb|FQ438300.1|FQ438300
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
EST: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAG CCTGCATTTCTGGTCTGGGCCAAACAGCACTTTATGCAAATTTCTTCCACT
genomic: CAACTGGATTTACCGTTATTTCACGGAGCAACATTTTAGCCGATGGATAGgtaagttgtg ... tgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACT
tttgtggccattgatgcatgtattctgaccgcatctttttttctttgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTACTACTTTATTAG
ttctgac putative branch site (score: 2)
ccgcatctttttttct CT-rich tract
tttttttctttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtgtcaataattaaaaagagcaacatttttttgtggccattgatgcatgtattctgaccgcatctttttttctttgtttatcagCCTGCATTTCTGGTCTGGTCCAAACAGCACTTTATGCAGATTTCTTCTACTACTACTTTATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT