Sequence
atgc intronic sequence ATGC exonic sequence...tttatatcagaaatcactgattctttagttgcatgtggcaagcactactgaatagaaacctgacaatatttcaatgcttccgatgtataaaaaaaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G29330.1 (Glycine max), 3'ss of exon 4
tttatatcagaaatcactgattctttagttgcatgtggcaagcactactgaatagaaacctgacaatatttca------atgcttccgatgtataaaaa-----aaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGG
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-----------tatttttgattgagtgattgcatatagtgtactacgtaaagtgatagtttctttttcctttacttcctctgctgccaacttacatttatgtttatataagGTCATTGGAGACATTACAAAAGATAGCACTTTGATCCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGCCCCAAGG
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G12480.1 (Glycine max), 3'ss of exon 4
--tttatatc-agaaatcactgattctttagttgcatgtggcaagcactactgaatagaaacctgacaatatttcaatgcttccgatgtataaaaaaaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGG
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tttttttattgagtgattgcatatagtgtaat-acgtaaagtcatagtttctttatctatttcttcctctgctgctaatttact--tttatgtttaaactaagGTCATTGGAGACATTACAAAAGATAGCACTTTGATCCCTGAATACTTTAAAGGCGTGAAGAAAGTGATTAATGCTGCTTCTGTCATTGTTGGTCCTAAGG
upper sequence: Vv10s0003g01640.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G18810.1 (Arabidopsis thaliana), 3'ss of exon 4
tttatatcagaaatcactga--ttcttta-gttgcatgtggcaagcactactgaatagaaacctgacaatatttcaatgcttccgatgtataaaaaaaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGG
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-------gtgagtccactgaaattttccacattgtattcttgttatttttatagttataagaccattgataactatctgcat---atatttcaatgttgtcagATTGTTGCAGATATTACAAAGGAGAATACATTGGTTCCTGAAAAGTTCAAAGGAGTGAGGAAAGTGATCAATGCTGTTTCTGTTATTGTTGGTCCAAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27584507|gb|CB007202.1|CB007202EST: TCAGGAATGAGGAGAAGGCAAGAAAGATGTTAGGTCCAGACATTGACTTG ATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAA
genomic: TCAGAAATGAGGAGAAGGCAAGAAAGATGTTAGGTCCAGACATTGACTTGgtgagctagc ... aaaaaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactgaatagaaacctgacaatatttcaatgcttccgatgtataaaaaaaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGG
acctgac putative branch site (score: 3)
atgtataaaaaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttatatcagaaatcactgattctttagttgcatgtggcaagcactactgaatagaaacctgacaatatttcaatgcttccgatgtataaaaaaaattagATTGTTGGTGACATTACCAAGGAGAGCACTCTTGTCCCCGAGTACTTCAAAGGAGTGAGGAAAGTTATCAATGCTGTTTCAGTCATTGTTGGCCCTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - aaatcac
- - - - - - - - - - - - - - - gcatgtg
- - - - - - - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - -agaaacc