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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcctatcgtaatcttcagagaaagttctgtaatagtcccttttttgtgtcttttgattttttgtccatttgaaactgtttacatggtaacttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT

Basic information

species Vitis vinifera
transcript Vv10s0003g01240.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 4
---gtattcctatcgtaatcttcagagaaagtt-ctgt---aatagtcccttttttgtgtcttttgattttttgt------ccatttgaaactgtttacatggtaa--cttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
     | |  |||  || | | | || |   || ||||   |||     | | |||||||  | ||    |  ||      |  ||| | |   || |||   ||    | || || ||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||  |||||||||||||| || |||||  | |||||||| |||
gtatgacttttattttattttcctgacagtattactgtttaaatgccaacctctttgtgtactatgtgcctaagttgggccctgtttaacaaatttaacaccatactcttcatatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA05G29080.7 (Glycine max), 3'ss of exon 4
---gtattcctatcgtaatcttcagagaaagttc---tgtaatagtcc-cttttttgtgtcttttg------attttttgtccatttgaaactgtttacatggtaa--cttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
     | |  |||  || | | | || |   ||    | |||| | || | | || ||||  | ||      | ||  || |   || | |   || |||  |||    | || || ||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||  |||||||||||||| || |||||  | |||||||| |||
gtatgacttttattttattttcctgacagtattattgtttaattgcccacctcttcgtgtactatgtgccaaagttggtgcctgcttaacaaatttaacacagtactcttcatgtctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 4
gtattcctatcgtaatcttcagagaaagttctgtaatagtcccttttttgtgtcttttgattttttgtccatttgaaactgtttacatggtaacttatttccc---agGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
              || || ||   | ||| ||      | ||| |     ||  |||  ||||       || | |||||  |    | |    |   |      ||||| |||||  | || |||||||| || || || || ||  | || ||||| ||  ||| ||||||||| |||||||| ||||||||||| |||||||| 
---------gtaagattttgagttgaggttttg----gatgcctgtgggacgtgcttttcttttggcggggttcgtaactgactgtgcgattgactgcgtggtggtagGGCATGCCATTTGGCGAAGCAAGCATTCGACGAGGCAATTGCCGAATTGGACACATTGAGTGAGGAGTCGTACAAGGACAGCACATTGATCATGCAACTA

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S67_176V6.1 (Physcomitrella patens), 3'ss of exon 4
-----------------------------------------gtattcctatcgtaatcttcagagaaagttctgtaatagtcccttttttgt--gtcttttgattttttgtccatttgaaactgtttacatggtaacttatt------------tcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
                                         ||  |   | |||     |  ||    |   |  | |  |    |||| |   |  |  ||| ||| ||   || ||    ||      |  |||     |            |  |||||| |||||  | || |||||||| |||||||| |||||| | ||| |||||||  ||| ||| ||||| |||||||| ||||||||||| |||||  | 
gtaagattgtggtagttgattatgcggtgaagcagatgagagtgattgaaccgt--ctattggacggggccattgattgatgaagttttcggtagcatgctgaatttgtgcttatctgggtttgcaccggtaataatcaggtagtggtatggaattacagGGCATGCCATTTGGCGAAGCAAGCATTTGATGAGGCTATCGCTGAGCTGGATACGTTGAGTGAAGAGTCGTACAAGGACAGCACATTGATCATGCAGTTG

upper sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 3'ss of exon 4
gtattcctatcgtaatcttcagagaaagttctgt-aatagtcccttttttgtgtcttttgatt------ttttgtccatttgaaactgt--ttacatggtaacttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
   |    ||  |  ||   |||||     ||||   | |    |     |||| ||||  ||      ||   |  ||| ||   |||   |  |||  |     | |  |||||| |||||  | || || ||||| ||||| || || ||  | |||||||||||  | | ||||||||| |||||||| ||||||||||| ||||| || 
--gtatgaattttggtcagtagagacttagctgttggttggttttacggcgtgttttttttttcagggattgaatatattggagcttgtgactgaatgccattgactgtggcagGGCATGCCATTTGGCGAAACAAGCATTTGACGAGGCGATTGCTGAGTTGGATACGTTAAGTGAGGAGTCGTACAAGGACAGCACATTGATCATGCAGCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809819|gb|FQ398444.1|FQ398444
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110723333|gb|EE100523.1|EE100523
EST:     GCCTTGAACTTCTCTGTTTTTTACTACGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|71866787|gb|DT015842.1|DT015842
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTC
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTC
EST: gi|351053794|gb|FQ441560.1|FQ441560
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCGAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349812444|gb|FQ407063.1|FQ407063
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349808236|gb|FQ403423.1|FQ403423
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351024890|gb|FQ433307.1|FQ433307
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349828886|gb|FQ419219.1|FQ419219
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351047266|gb|FQ454877.1|FQ454877
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|161717158|gb|FC064700.1|FC064700
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110686512|gb|EE064232.1|EE064232
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|34549980|gb|CF518212.1|CF518212
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351025105|gb|FQ433522.1|FQ433522
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349813283|gb|FQ411523.1|FQ411523
EST:     GCCTTGAACTTCTCTGTGTTTTATTATGAA-TTATGAACTCCCCT-AAAG                         GGCCTGCCACCTCGCAAAG
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAG
EST: gi|349816139|gb|FQ399370.1|FQ399370
EST:     GCCTTGAACTTCTCCGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGGAA-CTATCTCAGAGTTGG
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATG-AAGCTATCTCAGAGTTGG
EST: gi|351019964|gb|FQ439781.1|FQ439781
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTCTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349811098|gb|FQ406086.1|FQ406086
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|30299169|gb|CB975963.1|CB975963
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351036840|gb|FQ459362.1|FQ459362
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCANAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349821467|gb|FQ411088.1|FQ411088
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349823307|gb|FQ402506.1|FQ402506
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349827790|gb|FQ422658.1|FQ422658
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349824616|gb|FQ413283.1|FQ413283
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCANAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349821782|gb|FQ408220.1|FQ408220
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCANAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110719939|gb|EE095488.1|EE095488
EST:     CCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTACCCTNGAA-G                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGG
genomic: CCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCT-GAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGG
EST: gi|351030304|gb|FQ432242.1|FQ432242
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110689879|gb|EE066488.1|EE066488
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349826263|gb|FQ416068.1|FQ416068
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351029922|gb|FQ427762.1|FQ427762
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|161717280|gb|FC069185.1|FC069185
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351018819|gb|FQ425721.1|FQ425721
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110685470|gb|EE062216.1|EE062216
EST:     GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|161713990|gb|FC063175.1|FC063175
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349827590|gb|FQ422458.1|FQ422458
EST:     GTCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|71870436|gb|DT019491.1|DT019491
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351031569|gb|FQ459826.1|FQ459826
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351016120|gb|FQ432075.1|FQ432075
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349827588|gb|FQ422456.1|FQ422456
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110706390|gb|EE081872.1|EE081872
EST:     GCCTTGAACTTCTCTGTTTTTTACTACGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|349828573|gb|FQ417315.1|FQ417315
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|110710971|gb|EE087636.1|EE087636
EST:     GTCTTGGACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAGAG                         GGCCTGCCACCTCGCAAAGCCAGCTTTTGATGAAGCTATCTCAAAGTTGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA
EST: gi|351048670|gb|FQ448944.1|FQ448944
EST:     GCCTTGAACTTCTCTGTGTTTTACTATGAAATTATGAACTCCCCTGAAAG                         GGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTGGGA
genomic: GCCTTGAACTTCTCTGTTTTTTACTATGAAATTATGAACTCCCCTGAAAGgtattcctat ... tatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttttgattttttgtccatttgaaactgtttacatggtaacttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
                                     tggtaac  putative branch site (score: 2)
                                           cttatttccc  CT-rich tract
     tttgatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattcctatcgtaatcttcagagaaagttctgtaatagtcccttttttgtgtcttttgattttttgtccatttgaaactgtttacatggtaacttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG