Sequence
atgc intronic sequence ATGC exonic sequencegtatggccattttaaacacaaattcatattcatcctatgccatttattcttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggccattttaaacacaaattcatattcatcctatgccatttattcttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG
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gtattattcttttttatatgaatacaaatacaa---aaactaatgaaactatgatgt-gtacta---ttcatttaaatggatcttgctcttgtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggccattttaaacacaaattcatattcatcctatgccatttattcttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG
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gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
upper sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggccattttaaacacaaattcatattcatcctatgccatttatt--cttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG
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--------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaa------atggatcctactctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catttattcttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG
ttgtttcttcc CT-rich tract
aatcttatatgaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggccattttaaacacaaattcatattcatcctatgccatttattcttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC