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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01390.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
           | | |  ||  || ||||  ||   ||| ||| ||  |      | | |  || ||  | ||      |||| ||    |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | |||||   |||||||||||||||||
--------gtatcacattcagttttacataaat---ata-aataca--caaactagctagtatgtatggtttaaatggatcctactct--tgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
||||      ||   | |  | | || || ||    |   |||| |    | ||   || ||| | || | ||  ||    |||  ||  |||||||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || |||  |||||||||||||||||
gtattattcttttttatatgaatacaaatacaaa--aactaatgaaac--tatgatgtgtact-attcattta-aatggatcttgctct-tgtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
||||      ||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||    |   ||||    ||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || ||   ||||||||||||||| |
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG
                                    tattccttcttccgt  CT-rich tract
                        aatcttatatgatatt  TA-rich tract