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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggacattttaaacacaagttcatattcatcctatgcaatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA

Basic information

species Vitis vinifera
transcript Vv09s0054g01290.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggacattttaaacacaagttcatattcatcctatgcaatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA
||||     ||||  | |  | | || || ||        || | ||     | || ||      || | || | ||      |    | || || || | ||  ||||||| | ||  |||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||     
gtattattcttttttatatgaatacaaataca------aaaactaatgaaactatgatgtgtactat-tcatttaaatggatcttgctcttgtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG-----

upper sequence: Vv09s0054g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggacattttaaacacaagttcatattcatcc---tatgcaatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA
         | | | |  ||  || | ||  ||     ||  |||  ||  || || |||  |  | ||      ||| |      ||||    | || || ||||  ||||||| | ||  |||||||||||||||||||||||||||||| |  | ||||| |||||||||||||||||||     
--------gtatcacattcagttttacataaatataaatacacaaactag-ctagtatgtatggtttaa------atggatcctactctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG-----

upper sequence: Vv09s0054g01290.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggacattttaaacacaagttcatattcatcctatgcaatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA
||||     ||||  | | | |   |||   |  | |  |||   |  || |  |||   |       ||| ||| |  |   ||||    | || || ||||  ||||||| | ||  |||||||||||||||||||||||||||||| || | || || ||||||||||||||||| |     
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG-----


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA
                                      ttgcttcttcc  CT-rich tract
                        aatcttatatgaaatt  TA-rich tract