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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccatttcaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01230.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggccatttcaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG
||||     |||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||    |   ||||    ||||||  ||||  | ||||| ||||  ||||||||||||||||||||||||||||   || | || ||   |||||||||| |||| |
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG

upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggccatttcaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG
         | ||| |  ||  || ||||  ||   ||| ||| ||       |  |     |     ||| |||      |      | |||||||  ||||  | ||||| ||||  ||||||||||||||||||||||||||||   |  | || ||   |||||||||| ||||||
--------gtatcacattcagttttacataaat---ata-aatacacaaactagctagtatgtatggtttaaatgg----atcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggccatttcaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG
||||     |||   | |  | | || || ||    |   |||| |    | ||   || |||     | || | |     | |    | |||||||  | ||  | ||||| ||||  ||||||||||||||||||||||||||||   || | || |||  |||||||||| ||||||
gtattattcttttttatatgaatacaaatacaaa--aactaatgaaac--tatgatgtgtacta---ttcatttaaatggatcttgctcttgtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG
                                      ttgtttcttcc  CT-rich tract
                        aatcttatatgatatt  TA-rich tract