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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccacttgaaacaaaagttcacattcatcctatacaatgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG

Basic information

species Vitis vinifera
transcript Vv09s0054g01220.t01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacaaaagttcacattcatcctatacaatgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG
||||      ||   | |  | | || || ||    |   |||| |    | ||   || |||     | || | |     | |    | |||||||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  |||||| ||||||||||
gtattattcttttttatatgaatacaaatacaaa--aactaatgaaac--tatgatgtgtacta---ttcatttaaatggatcttgctcttgtagATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAG

upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
gtatggccacttgaaacaaaagttcacattcatcctatacaatgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG
||||      ||   | | | |   | |   |  | |   ||   |     |     |    |  || | |   ||  ||| |  |     ||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   |||||| |||||||| |
gtattattcttttttatatatgaatataaatactcaaacaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt-----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG

upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA03G27620.1 (Glycine max), 3'ss of exon 1
gtatggccacttgaaacaaaagttcacattca-tcctataca---atgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG
                       ||||||||| |  || | |   ||  || |       |   | |   | |  | | |     |      | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   |||||| ||||||||||
--------------------gtatcacattcagttttacataaatataaatacacaaactagctagtatgtatggtttaaatggatcctactcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG
                                      ttgtttcttcc  CT-rich tract
                        aatcttatatgatatt  TA-rich tract