Sequence
atgc intronic sequence ATGC exonic sequence...ttttttccttagcacattaaatacatgcctatggtatttcatgttttgtagttttggtaattcaatttcctgcttaatactaatgtgctattcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA08G23730.1 (Glycine max), 3'ss of exon 4
ttttttccttagcacattaaatacatgcctatggtatttcatgttttgtagttttggtaat--tcaatttcctgcttaatactaatgtgctatt--catggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAG
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---tttcagttgcttgctatattcatctgtttaatatttaat-tgtgatactcttggttatgctttgttgcattccttgtcataataagaaattgctctgacagATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTTGAGACAACCATAAG
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA07G02290.1 (Glycine max), 3'ss of exon 3
----ttttttccttagcacattaaatacatgcctatggtatttcatgttttgtagttttggtaattcaatttcctgcttaatactaatgtgctattcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAG
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atatttgtttcagttgcttgctgtattcatctgtttaat-tgtgataccctgggttatgctttgttgcattccttgtc--ataataagaaattgctc-tgacagATGGGTTGCAAACTCTTTGGATTTTAACAAGGATTATGAAGCAAGTGTTTTTGAGACAACCATAAG
upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------ttttttccttagcacattaaatacatgcctatggtatttcatgttttgtagttttggtaattcaatttcctgcttaatactaatgtgctattcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAG
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gtgagtaattgcaggctcttcatttattcatatgta-actgttttcgtcccagttgcaaatccaactttttacttcttcatctttgctaatcttcatttgcttattgt-cttttatttgcagGTGGGTTGCAAGCTCATTGGATTTCGACAAGGATTATGACGCCAGTATGTTTGAGACAACCATAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27583590|gb|CB006285.1|CB006285EST: GATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGA GTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTT
genomic: GATACATTATATATAATGGGACTAGATGAGCAGTTCCAAAGAGCTAGAGAgtgagtttta ... ttcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtagttttggtaattcaatttcctgcttaatactaatgtgctattcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAG
tactaat putative branch site (score: 1)
taattcaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttttccttagcacattaaatacatgcctatggtatttcatgttttgtagttttggtaattcaatttcctgcttaatactaatgtgctattcatggcagGTGGGTTGCAAACTCATTGGATTTCAACAAGAATTATGAGGCTAGTGTTTTTGAGACGACCATAAG
- - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtgc